Description

Ensembl ID AMTR_s00037p00179540 Gene ID Accession -
Symbol Alias - Full Name Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain
Status Confidence Length 49972 bases Strand Plus strand
Position AmTr_v1.0_scaffold00037 : 2999792 - 3049763 RNA binding domain DNA_pol_A_exo1 , HRDC
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN17374 DNA_pol_A_exo1 PF01612 2.3e-43 1
ERN17374 HRDC PF00570 1.2e-06 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN17374 2949 982aa ERN17374

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00037p00179540amborella_trichopodaERN1537332.010617.4603amborella_trichopodaERN1737412.32186.72098
AMTR_s00037p00179540amborella_trichopodaERN1930833.582117.5373amborella_trichopodaERN1737418.32999.5723
AMTR_s00037p00179540amborella_trichopodaERM9357529.157916.9474amborella_trichopodaERN1737428.207716.3951

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00037p00179540amborella_trichopodaERN1737463.340149.5927papaver_somniferumRZC4634262.638549.0433
AMTR_s00037p00179540amborella_trichopodaERN1737462.932849.389papaver_somniferumRZC6566366.594852.2629
AMTR_s00037p00179540amborella_trichopodaERN1737456.008140.7332marchantia_polymorphaPTQ4819758.949642.8725
AMTR_s00037p00179540amborella_trichopodaERN1737463.238349.5927cannabis_sativa_femalecds.evm.model.10.147464.152950.3099
AMTR_s00037p00179540amborella_trichopodaERN1737463.645650.5092ficus_caricaFCD_00020348-RA:cds66.560252.8222
AMTR_s00037p00179540amborella_trichopodaERN1737462.2250beta_vulgarisKMT0203466.630353.5442
AMTR_s00037p00179540amborella_trichopodaERN1737463.747551.1202theobroma_cacaoEOY0149565.276352.3462
AMTR_s00037p00179540amborella_trichopodaERN1737442.158928.3096chlamydomonas_reinhardtiiPNW8448328.144118.8987
AMTR_s00037p00179540amborella_trichopodaERN1737461.914549.1853cucumis_meloMELO3C018818.2.168.085154.0873
AMTR_s00037p00179540amborella_trichopodaERN1737462.932848.2688arabidopsis_thalianaAT2G32415.369.282553.139
AMTR_s00037p00179540amborella_trichopodaERN1737464.05351.1202populus_trichocarpaPotri.002G229000.3.v4.167.561853.9205
AMTR_s00037p00179540amborella_trichopodaERN1737462.016349.389cucumis_sativusKGN4351868.891454.8643
AMTR_s00037p00179540amborella_trichopodaERN1737451.731239.7149brassica_junceacds.BjuA05g11040S71.248254.6985
AMTR_s00037p00179540amborella_trichopodaERN1737429.837120.4684brassica_junceacds.BjuB01g41650S33.257722.815
AMTR_s00037p00179540amborella_trichopodaERN1737412.32188.85947brassica_junceacds.BjuB06g38350S62.371144.8454
AMTR_s00037p00179540amborella_trichopodaERN1737453.767840.6314brassica_napusCDY1220866.415150.1887
AMTR_s00037p00179540amborella_trichopodaERN1737461.812648.167brassica_napusCDY1914070.092454.6189
AMTR_s00037p00179540amborella_trichopodaERN1737431.568222.3014brassica_napusCDY4388856.776640.1099
AMTR_s00037p00179540amborella_trichopodaERN1737461.405347.9633brassica_napusCDY1532269.872554.5771
AMTR_s00037p00179540amborella_trichopodaERN1737462.627348.0652brassica_napusCDY4826867.582451.8681
AMTR_s00037p00179540amborella_trichopodaERN1737424.847217.4134brassica_napusCDY6904953.744537.6652
AMTR_s00037p00179540amborella_trichopodaERN1737461.201647.6578prunus_persicaONI1845465.113850.7042
AMTR_s00037p00179540amborella_trichopodaERN1737463.238350.611cajanus_cajanC.cajan_27312.t69.775355.8427
AMTR_s00037p00179540amborella_trichopodaERN1737462.83149.2872malus_domestica_goldenmRNA:MD09G009460065.015851.0011
AMTR_s00037p00179540amborella_trichopodaERN1737462.423650.3055glycine_maxKRH5613366.702953.7541
AMTR_s00037p00179540amborella_trichopodaERN1737451.731241.1405glycine_maxKRH2537264.303851.1392
AMTR_s00037p00179540amborella_trichopodaERN1737463.340149.6945prunus_dulcisVVA1761065.336151.2605
AMTR_s00037p00179540amborella_trichopodaERN1737462.321848.167medicago_truncatulaAES8813165.806450.8602
AMTR_s00037p00179540amborella_trichopodaERN1737459.572345.9267lupinus_angustifoliusOIW0595064.356449.615
AMTR_s00037p00179540amborella_trichopodaERN1737452.749541.1405physcomitrium_patensPp3c18_1700V3.154.641342.616
AMTR_s00037p00179540amborella_trichopodaERN1737462.321848.8798phaseolus_vulgarisESW0453866.162251.8919
AMTR_s00037p00179540amborella_trichopodaERN1737461.303547.7597pisum_sativumPsat7g157200.1.cds65.222150.8126
AMTR_s00037p00179540amborella_trichopodaERN1737462.525548.8798vigna_angularisKOM5037464.563650.4732
AMTR_s00037p00179540amborella_trichopodaERN1737462.627348.8798vigna_unguiculataVigun11g117200.1.v1.266.558451.9481
AMTR_s00037p00179540amborella_trichopodaERN1737463.645651.0183manihot_esculentaOAY3503266.702253.4685
AMTR_s00037p00179540amborella_trichopodaERN1737461.914548.6762solanum_lycopersicumSolyc07g052340.3.165.096451.1777
AMTR_s00037p00179540amborella_trichopodaERN1737462.321849.2872capsicum_annuumPHT7644864.899351.3256
AMTR_s00037p00179540amborella_trichopodaERN1737462.729149.2872vigna_radiataVradi02g07790.166.594652.3243
AMTR_s00037p00179540amborella_trichopodaERN1737461.914549.2872sesamum_indicumSIN_1016827.t61.476248.9383
AMTR_s00037p00179540amborella_trichopodaERN1737461.405347.6578lactuca_sativacds-PLY80361.170.857854.9941
AMTR_s00037p00179540amborella_trichopodaERN1737461.099847.7597helianthus_annuusmRNA:HanXRQr2_Chr16g073178166.298351.8232
AMTR_s00037p00179540amborella_trichopodaERN1737461.405347.7597avena_sativa_ot3098cds.AVESA.00001b.r3.2Cg0000708.460.119646.7597
AMTR_s00037p00179540amborella_trichopodaERN1737461.710848.3707avena_sativa_ot3098cds.AVESA.00001b.r3.2Dg0002675.259.295546.4775
AMTR_s00037p00179540amborella_trichopodaERN1737462.016348.4725avena_sativa_ot3098cds.AVESA.00001b.r3.2Ag0000112.160.118546.9891
AMTR_s00037p00179540amborella_trichopodaERN1737462.118148.2688lolium_perennecds.KYUSt_chr2.1954163.607949.4265
AMTR_s00037p00179540amborella_trichopodaERN1737424.745419.9593oryza_longistaminataAMDW01040044.1_FGP00172.321458.3333
AMTR_s00037p00179540amborella_trichopodaERN1737453.360542.668oryza_longistaminataKN539000.1_FGP01457.519245.9934
AMTR_s00037p00179540amborella_trichopodaERN1737417.311613.442avena_sativa_sangAVESA.00010b.r2.UnG1474540.1.CDS62.96348.8889
AMTR_s00037p00179540amborella_trichopodaERN1737455.091643.3809avena_sativa_sangAVESA.00010b.r2.2DG0350230.1.CDS59.320246.7105
AMTR_s00037p00179540amborella_trichopodaERN1737461.405347.7597avena_sativa_sangAVESA.00010b.r2.2CG0275650.1.CDS62.87848.9051
AMTR_s00037p00179540amborella_trichopodaERN1737460.794347.8615oryza_rufipogonORUFI07G16580.157.961245.6311
AMTR_s00037p00179540amborella_trichopodaERN1737410.28517.53564oryza_brachyanthaOB07G21890.157.386442.0455
AMTR_s00037p00179540amborella_trichopodaERN1737456.619144.8065oryza_brachyanthaOB07G21900.164.801951.2821
AMTR_s00037p00179540amborella_trichopodaERN1737458.452146.334oryza_glaberrimaORGLA07G0131300.160.676548.0973
AMTR_s00037p00179540amborella_trichopodaERN1737460.081547.3523oryza_punctataOPUNC07G14830.160.081547.3523
AMTR_s00037p00179540amborella_trichopodaERN1737461.60948.4725setaria_italicaKQL2598462.955349.5317
AMTR_s00037p00179540amborella_trichopodaERN1737461.60948.5743setaria_viridisTKW3497862.955349.6358
AMTR_s00037p00179540amborella_trichopodaERN1737461.303548.3707sorghum_bicolorKXG3631860.624447.8348
AMTR_s00037p00179540amborella_trichopodaERN1737461.812648.167triticum_turgidumTRITD2Av1G090870.362.12948.4135
AMTR_s00037p00179540amborella_trichopodaERN1737461.914548.2688triticum_turgidumTRITD2Bv1G094120.362.231348.5159
AMTR_s00037p00179540amborella_trichopodaERN1737461.507147.7597secale_cerealeSECCE2Rv1G0090210.162.461248.5005
AMTR_s00037p00179540amborella_trichopodaERN1737461.812648.3707triticum_aestivumTraesCS2D02G229500.162.512948.9186
AMTR_s00037p00179540amborella_trichopodaERN1737461.710847.8615triticum_aestivumTraesCS2A02G223500.162.409948.4037
AMTR_s00037p00179540amborella_trichopodaERN1737461.812647.9633triticum_aestivumTraesCS2B02G273800.162.512948.5067
AMTR_s00037p00179540amborella_trichopodaERN1737460.692547.9633zea_maysZm00001eb322610_P00159.068446.6799
AMTR_s00037p00179540amborella_trichopodaERN1737461.60950.9165ananas_comosusAco009032.1.mrna166.703455.1268
AMTR_s00037p00179540amborella_trichopodaERN1737463.238348.4725chenopodium_quinoaAUR62025026-RA:cds66.204750.7463
AMTR_s00037p00179540amborella_trichopodaERN1737452.036737.169chara_brauniiGBG6377839.890728.4934
AMTR_s00037p00179540amborella_trichopodaERN1737462.321847.8615arabis_alpinaKFK3112567.924552.1643
AMTR_s00037p00179540amborella_trichopodaERN1737461.405347.8615corylus_avellanaCav05g02930.t134.203126.6591
AMTR_s00037p00179540amborella_trichopodaERN1737462.016348.0652brachypodium_distachyonKQK1602362.848348.71
AMTR_s00037p00179540amborella_trichopodaERN1737460.590647.4542oryza_glumipatulaOGLUM07G15820.157.543545.0677
AMTR_s00037p00179540amborella_trichopodaERN1737460.488847.4542oryza_meridionalisOMERI07G12830.246.551736.5204
AMTR_s00037p00179540amborella_trichopodaERN1737463.136550.1018ipomoea_trilobaitb02g06670.t165.67852.1186
AMTR_s00037p00179540amborella_trichopodaERN1737460.794347.8615kalanchoe_fedtschenkoiKaladp0036s0026.1.v1.165.89451.8764
AMTR_s00037p00179540amborella_trichopodaERN1737462.016348.2688eucalyptus_grandisKCW8878265.909151.2987
AMTR_s00037p00179540amborella_trichopodaERN1737462.016348.5743trifolium_pratenseTp57577_TGAC_v2_mRNA475464.856250.7987
AMTR_s00037p00179540amborella_trichopodaERN1737462.2250.4073gossypium_raimondiiKJB7822363.778751.6701
AMTR_s00037p00179540amborella_trichopodaERN1737462.118148.167arabidopsis_lyratafgenesh1_pm.C_scaffold_400103968.462453.0864
AMTR_s00037p00179540amborella_trichopodaERN1737461.201647.7597hordeum_vulgareHORVU.MOREX.r3.2HG0141480.162.344448.6515
AMTR_s00037p00179540amborella_trichopodaERN1737455.091643.9919oryza_barthiiOBART07G16250.162.833950.1742
AMTR_s00037p00179540amborella_trichopodaERN1737424.439919.7556asparagus_officinalisONK6551066.666753.8889
AMTR_s00037p00179540amborella_trichopodaERN1737437.474530.6517asparagus_officinalisONK7554065.831853.8462
AMTR_s00037p00179540amborella_trichopodaERN1737461.812649.389musa_acuminataMa04_p30200.264.232851.3228
AMTR_s00037p00179540amborella_trichopodaERN1737462.932848.167arabidopsis_hallerig03122.t268.590552.4972
AMTR_s00037p00179540amborella_trichopodaERN1737461.099848.2688eragrostis_tefEt_5B_045030.CDS59.347246.8843
AMTR_s00037p00179540amborella_trichopodaERN1737460.590647.556eragrostis_tefEt_5A_042394.CDS60.10147.1717
AMTR_s00037p00179540amborella_trichopodaERN1737460.99847.4542corymbia_citriodoracds-KAF8043066.167.077352.1837
AMTR_s00037p00179540amborella_trichopodaERN1737463.543851.4257rosa_chinensisPRQ5278466.312453.6663
AMTR_s00037p00179540amborella_trichopodaERN1737413.034610.5906rosa_chinensisPRQ3670980.503165.4088
AMTR_s00037p00179540amborella_trichopodaERN1737460.183348.9817juglans_regiacds.Jr10_14060_p168.561555.8005
AMTR_s00037p00179540amborella_trichopodaERN1737464.460352.1385juglans_regiacds.Jr10_14050_p166.913354.1226
AMTR_s00037p00179540amborella_trichopodaERN1737453.156843.1772juglans_regiacds.Jr10_14070_p167.880455.1365
AMTR_s00037p00179540amborella_trichopodaERN1737464.460352.1385juglans_regiacds.Jr10_14040_p166.772154.0084
AMTR_s00037p00179540amborella_trichopodaERN1737442.362532.7902saccharum_spontaneumSspon.02G0006750-1A-mRNA-1:cds36.300228.0977
AMTR_s00037p00179540amborella_trichopodaERN1737438.492929.2261saccharum_spontaneumSspon.02G0006740-1A-mRNA-1:cds35.69427.101
AMTR_s00037p00179540amborella_trichopodaERN1737460.38747.4542triticum_dicoccoidesTRIDC2AG029890.464.879650.9847
AMTR_s00037p00179540amborella_trichopodaERN1737432.077423.3198brassica_oleraceaBo4g045950.159.32243.1262
AMTR_s00037p00179540amborella_trichopodaERN1737435.132424.0326brassica_oleraceaBo9g134710.155.915738.2496
AMTR_s00037p00179540amborella_trichopodaERN1737461.099847.9633brassica_oleraceaBo4g178030.169.848754.8312
AMTR_s00037p00179540amborella_trichopodaERN1737458.350346.2322oryza_indicaBGIOSGA025792-PA60.379347.8398
AMTR_s00037p00179540amborella_trichopodaERN1737442.05733.0957dioscorea_rotundataDRNTG_35389.261.36748.2912
AMTR_s00037p00179540amborella_trichopodaERN1737460.896148.167leersia_perrieriLPERR07G13490.160.958248.2161
AMTR_s00037p00179540amborella_trichopodaERN1737463.136550olea_europaeaOE9A100128C264.785851.3062
AMTR_s00037p00179540amborella_trichopodaERN1737441.751532.3829actinidia_chinensisPSS1614965.079450.4762
AMTR_s00037p00179540amborella_trichopodaERN1737451.425741.3442prunus_aviumPav_sc0001077.1_g020.1.mk:mrna71.327757.3446
AMTR_s00037p00179540amborella_trichopodaERN1737463.44250.8147quercus_subercds-POE96859.170.078756.1305
AMTR_s00037p00179540amborella_trichopodaERN1737462.83150.1018nicotiana_attenuataOIT0094065.22252.0085
AMTR_s00037p00179540amborella_trichopodaERN1737462.118150.1018citrus_clementinaESR6080564.618652.1186
AMTR_s00037p00179540amborella_trichopodaERN1737461.507147.9633brassica_rapa_ro18A04p030430.1_BraROA.169.107653.8902
AMTR_s00037p00179540amborella_trichopodaERN1737459.979646.0285brassica_rapa_ro18A05p015110.1_BraROA.141.304331.6971
AMTR_s00037p00179540amborella_trichopodaERN1737433.808623.1161brassica_rapa_ro18A10g500980.1_BraROA.154.695237.397
AMTR_s00037p00179540amborella_trichopodaERN1737439.103926.9857brassica_rapa_ro18A10p018700.1_BraROA.155.652238.4058
AMTR_s00037p00179540amborella_trichopodaERN1737453.156840.1222daucus_carotaKZM9652359.657145.0286
AMTR_s00037p00179540amborella_trichopodaERN1737460.285148.8798nymphaea_colorataNC1G0134710.1:cds66.442253.8721
AMTR_s00037p00179540amborella_trichopodaERN1737462.118149.4908coffea_canephoraCDP1081264.48251.3742
AMTR_s00037p00179540amborella_trichopodaERN1737461.914548.778aegilops_tauschiiAET2Gv20476200.461.16748.1891
AMTR_s00037p00179540amborella_trichopodaERN1737463.034651.222pistacia_veracds-EVM0027916.165.641653.3404
AMTR_s00037p00179540amborella_trichopodaERN1737436.150727.3931digitaria_exilisDexi2B01G0026730.1:cds56.438842.7663
AMTR_s00037p00179540amborella_trichopodaERN1737436.252527.4949digitaria_exilisDexi2A01G0028120.1:cds56.507942.8571
AMTR_s00037p00179540amborella_trichopodaERN1737460.794347.8615oryza_sativaOs07t0513100-0160.486347.619
AMTR_s00037p00179540amborella_trichopodaERN1737460.794347.9633panicum_halliiPUZ7222761.929548.8589
AMTR_s00037p00179540amborella_trichopodaERN1737464.663951.6293quercus_lobataQL08p033036:mrna66.771853.3123
AMTR_s00037p00179540amborella_trichopodaERN1737452.647742.3625eragrostis_curvulaTVU3890360.680848.8263
AMTR_s00037p00179540amborella_trichopodaERN1737451.120241.3442eragrostis_curvulaTVU3888561.746649.9385
AMTR_s00037p00179540amborella_trichopodaERN1737462.2247.8615camelina_sativaCsa07g010220.167.813552.1643
AMTR_s00037p00179540amborella_trichopodaERN1737462.932848.3707camelina_sativaCsa16g009000.160.528946.523
AMTR_s00037p00179540amborella_trichopodaERN1737461.914547.4542camelina_sativaCsa05g024450.169.327353.1357
AMTR_s00037p00179540amborella_trichopodaERN1737416.089613.1365selaginella_moellendorffiiEFJ1512478.60764.1791
AMTR_s00037p00179540amborella_trichopodaERN1737452.036740.6314selaginella_moellendorffiiEFJ0846035.265727.5362
AMTR_s00037p00179540amborella_trichopodaERN1737464.562151.5275vitis_viniferaVitvi12g00367_P00167.807554.1176
AMTR_s00037p00179540amborella_trichopodaERN1737461.405347.8615eutrema_salsugineumESQ5182769.072253.8373
AMTR_s00037p00179540amborella_trichopodaERN1737444.50134.5214echinochloa_crusgalliscaffold43.392.cds53.619641.5951
AMTR_s00037p00179540amborella_trichopodaERN1737461.507148.3707echinochloa_crusgalliscaffold239.95.cds63.312449.7904
AMTR_s00037p00179540amborella_trichopodaERN1737461.405348.8798echinochloa_crusgalliscaffold58.204.cds63.141450.2618
AMTR_s00037p00179540amborella_trichopodaERN1737415.580412.6273echinochloa_crusgalliscaffold43.423.cds61.249.6
AMTR_s00037p00179540amborella_trichopodaERN1737463.44251.4257corchorus_capsularisOMO9370661.990150.2488
AMTR_s00037p00179540amborella_trichopodaERN173749.979637.02648fraxinus_excelsiorFRAEX38873_v2_000291130.1.cds57.988240.8284
AMTR_s00037p00179540amborella_trichopodaERN1737454.684344.2974fraxinus_excelsiorFRAEX38873_v2_000157570.2.cds40.104632.4869
AMTR_s00037p00179540amborella_trichopodaERN1737460.590647.6578oryza_nivaraONIVA07G14350.160.10147.2727

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression