Description

Ensembl ID AMTR_s00036p00179350 Gene ID Accession -
Symbol Alias - Full Name hypothetical protein
Status Confidence Length 47003 bases Strand Plus strand
Position AmTr_v1.0_scaffold00036 : 2995982 - 3042984 RNA binding domain KH_1 , DNA_pol_A_exo1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN15373 KH_1 PF00013 1.2e-09 1
ERN15373 DNA_pol_A_exo1 PF01612 2e-24 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN15373 1137 378aa ERN15373

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00036p00179350amborella_trichopodaERN1930818.843310.6343amborella_trichopodaERN1537326.719615.0794
AMTR_s00036p00179350amborella_trichopodaERM9357515.15798.21053amborella_trichopodaERN1537338.095220.6349
AMTR_s00036p00179350amborella_trichopodaERN1737412.32186.72098amborella_trichopodaERN1537332.010617.4603

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00036p00179350amborella_trichopodaERN1537339.682524.3386chondrus_crispusCDF4106337.313422.8856
AMTR_s00036p00179350amborella_trichopodaERN1537373.54561.6402papaver_somniferumRZC5154483.987970.3927
AMTR_s00036p00179350amborella_trichopodaERN1537373.015961.3757papaver_somniferumRZC5004483.383770.0906
AMTR_s00036p00179350amborella_trichopodaERN1537370.105855.291marchantia_polymorphaPTQ3527273.407257.8947
AMTR_s00036p00179350amborella_trichopodaERN1537376.190567.1958cannabis_sativa_femalecds.evm.model.01.247384.705974.7059
AMTR_s00036p00179350amborella_trichopodaERN1537375.396865.3439ficus_caricaFCD_00003676-RA:cds83.577772.434
AMTR_s00036p00179350amborella_trichopodaERN1537375.661464.8148beta_vulgarisKMT1795584.866572.7003
AMTR_s00036p00179350amborella_trichopodaERN1537374.603265.0794theobroma_cacaoEOY2984372.868263.5659
AMTR_s00036p00179350amborella_trichopodaERN1537333.862418.7831chlamydomonas_reinhardtiiPNW8463842.244223.4323
AMTR_s00036p00179350amborella_trichopodaERN1537373.015961.6402cucumis_meloMELO3C010771.2.182.882969.97
AMTR_s00036p00179350amborella_trichopodaERN1537375.132362.963arabidopsis_thalianaAT2G25910.283.040969.5906
AMTR_s00036p00179350amborella_trichopodaERN1537374.603264.2857populus_trichocarpaPotri.006G234000.2.v4.183.43271.8935
AMTR_s00036p00179350amborella_trichopodaERN1537375.661466.4021populus_trichocarpaPotri.018G058900.4.v4.184.866574.4807
AMTR_s00036p00179350amborella_trichopodaERN1537375.925964.5503cucumis_sativusKGN6240984.411871.7647
AMTR_s00036p00179350amborella_trichopodaERN1537375.132363.7566brassica_napusCDY3532283.040970.4678
AMTR_s00036p00179350amborella_trichopodaERN1537375.132364.0212brassica_napusCDY6649683.040970.7602
AMTR_s00036p00179350amborella_trichopodaERN1537376.45568.254prunus_persicaONI3330784.256675.2187
AMTR_s00036p00179350amborella_trichopodaERN1537370.899560.0529cajanus_cajanC.cajan_22376.t68.367357.9082
AMTR_s00036p00179350amborella_trichopodaERN1537373.809565.0794malus_domestica_goldenmRNA:MD08G006450081.341171.7201
AMTR_s00036p00179350amborella_trichopodaERN1537372.751363.7566glycine_maxKRH1549279.710169.8551
AMTR_s00036p00179350amborella_trichopodaERN1537373.54564.2857glycine_maxKRH0552380.81470.6395
AMTR_s00036p00179350amborella_trichopodaERN1537376.190568.5185prunus_dulcisVVA1185283.96575.5102
AMTR_s00036p00179350amborella_trichopodaERN1537374.867762.4339medicago_truncatulaKEH3996380.397767.0455
AMTR_s00036p00179350amborella_trichopodaERN1537374.867762.963lupinus_angustifoliusOIV8998286.544372.7829
AMTR_s00036p00179350amborella_trichopodaERN1537366.666752.6455physcomitrium_patensPp3c15_8210V3.168.108153.7838
AMTR_s00036p00179350amborella_trichopodaERN1537366.931255.0265physcomitrium_patensPp3c9_13080V3.968.7556.5217
AMTR_s00036p00179350amborella_trichopodaERN1537373.280462.963phaseolus_vulgarisESW3296779.827168.5879
AMTR_s00036p00179350amborella_trichopodaERN1537374.867762.4339pisum_sativumPsat6g019200.1.cds79.718366.4789
AMTR_s00036p00179350amborella_trichopodaERN1537364.550356.6138vigna_angularisKOM4889879.478869.7068
AMTR_s00036p00179350amborella_trichopodaERN1537373.54564.2857vigna_unguiculataVigun08g035100.1.v1.279.202369.2308
AMTR_s00036p00179350amborella_trichopodaERN1537376.719664.8148manihot_esculentaOAY5406982.621169.8006
AMTR_s00036p00179350amborella_trichopodaERN1537342.32837.3016manihot_esculentaOAY2681882.051372.3077
AMTR_s00036p00179350amborella_trichopodaERN1537373.015961.3757solanum_lycopersicumSolyc08g065880.3.182.388169.2537
AMTR_s00036p00179350amborella_trichopodaERN1537360.317546.2963capsicum_annuumPHT8894665.142950
AMTR_s00036p00179350amborella_trichopodaERN1537367.989457.1429capsicum_annuumPHT7421276.946164.6707
AMTR_s00036p00179350amborella_trichopodaERN1537374.867760.3175lactuca_sativacds-PLY90771.182.02966.087
AMTR_s00036p00179350amborella_trichopodaERN1537378.042365.3439helianthus_annuusmRNA:HanXRQr2_Chr17g078628180.821967.6712
AMTR_s00036p00179350amborella_trichopodaERN1537372.751361.3757avena_sativa_ot3098cds.AVESA.00001b.r3.3Dg0001053.275.342563.5616
AMTR_s00036p00179350amborella_trichopodaERN1537372.751361.3757avena_sativa_ot3098cds.AVESA.00001b.r3.3Ag0001489.175.342563.5616
AMTR_s00036p00179350amborella_trichopodaERN1537373.54562.963avena_sativa_ot3098cds.AVESA.00001b.r3.3Cg0001208.276.164465.2055
AMTR_s00036p00179350amborella_trichopodaERN1537373.015962.1693lolium_perennecds.KYUSt_chr3.2116583.132570.7831
AMTR_s00036p00179350amborella_trichopodaERN1537370.105858.4656oryza_longistaminataKN539413.1_FGP00886.319271.987
AMTR_s00036p00179350amborella_trichopodaERN1537372.222260.8466avena_sativa_sangAVESA.00010b.r2.3AG0436050.1.CDS82.228969.2771
AMTR_s00036p00179350amborella_trichopodaERN1537373.015962.4339avena_sativa_sangAVESA.00010b.r2.3CG0476470.1.CDS83.132571.0843
AMTR_s00036p00179350amborella_trichopodaERN1537373.809561.1111solanum_tuberosumPGSC0003DMT40000644582.300968.1416
AMTR_s00036p00179350amborella_trichopodaERN1537370.370458.7302oryza_rufipogonORUFI01G22400.186.64572.3127
AMTR_s00036p00179350amborella_trichopodaERN1537371.957760.0529oryza_brachyanthaOB01G29670.164.761954.0476
AMTR_s00036p00179350amborella_trichopodaERN1537370.370458.7302oryza_glaberrimaORGLA01G0163700.186.64572.3127
AMTR_s00036p00179350amborella_trichopodaERN1537373.015959.7884oryza_punctataOPUNC01G20260.170.588257.8005
AMTR_s00036p00179350amborella_trichopodaERN1537372.486860.3175setaria_italicaKQL0560781.547667.8571
AMTR_s00036p00179350amborella_trichopodaERN1537372.486860.3175setaria_viridisTKW1505281.547667.8571
AMTR_s00036p00179350amborella_trichopodaERN1537372.751360.582sorghum_bicolorEES0313980.882467.3529
AMTR_s00036p00179350amborella_trichopodaERN1537372.486860.582triticum_turgidumTRITD3Av1G131040.382.035968.5629
AMTR_s00036p00179350amborella_trichopodaERN1537372.486860.3175triticum_turgidumTRITD3Bv1G117640.382.530168.6747
AMTR_s00036p00179350amborella_trichopodaERN1537372.486860.582secale_cerealeSECCE3Rv1G0178100.182.530168.9759
AMTR_s00036p00179350amborella_trichopodaERN1537372.486860.8466triticum_aestivumTraesCS3A02G207200.382.530169.2771
AMTR_s00036p00179350amborella_trichopodaERN1537372.486860.8466triticum_aestivumTraesCS3D02G208700.182.530169.2771
AMTR_s00036p00179350amborella_trichopodaERN1537372.222260.8466triticum_aestivumTraesCS3B02G233800.282.727369.697
AMTR_s00036p00179350amborella_trichopodaERN1537373.015961.1111zea_maysZm00001eb159970_P00168.148157.037
AMTR_s00036p00179350amborella_trichopodaERN1537371.428659.7884zea_maysZm00001eb356940_P00179.64666.6667
AMTR_s00036p00179350amborella_trichopodaERN1537373.809563.4921ananas_comosusAco005853.1.mrna181.578970.1754
AMTR_s00036p00179350amborella_trichopodaERN1537330.687815.0794caenorhabditis_elegansC10G6.1a.120.20919.93031
AMTR_s00036p00179350amborella_trichopodaERN1537341.534423.8095drosophila_melanogasterFBpp011307815.63758.96414
AMTR_s00036p00179350amborella_trichopodaERN1537337.566122.2222homo_sapiensENSP0000041505624.825214.6853
AMTR_s00036p00179350amborella_trichopodaERN1537375.396864.5503chenopodium_quinoaAUR62009206-RA:cds84.319572.1893
AMTR_s00036p00179350amborella_trichopodaERN1537371.957761.9048chenopodium_quinoaAUR62040203-RA:cds83.180471.5596
AMTR_s00036p00179350amborella_trichopodaERN1537366.666752.6455chenopodium_quinoaAUR62031977-RA:cds4837.9048
AMTR_s00036p00179350amborella_trichopodaERN1537375.396862.6984arabis_alpinaKFK3253283.577769.5015
AMTR_s00036p00179350amborella_trichopodaERN1537373.280464.5503corylus_avellanaCav06g08980.t184.969374.8466
AMTR_s00036p00179350amborella_trichopodaERN1537372.751360.582brachypodium_distachyonKQK0835982.831368.9759
AMTR_s00036p00179350amborella_trichopodaERN1537371.16458.9947oryza_glumipatulaOGLUM01G23490.180.780866.967
AMTR_s00036p00179350amborella_trichopodaERN1537374.867760.3175oryza_meridionalisOMERI01G18470.162.888950.6667
AMTR_s00036p00179350amborella_trichopodaERN1537374.074162.963ipomoea_trilobaitb15g21240.t183.086170.6231
AMTR_s00036p00179350amborella_trichopodaERN1537371.16460.3175kalanchoe_fedtschenkoiKaladp0102s0128.1.v1.180.538968.2635
AMTR_s00036p00179350amborella_trichopodaERN1537336.507920.6349galdieria_sulphurariaEME2727251.492529.1045
AMTR_s00036p00179350amborella_trichopodaERN1537372.486860.8466triticum_urartuTuG1812G0300002319.01.T0182.530169.2771
AMTR_s00036p00179350amborella_trichopodaERN1537361.904855.0265eucalyptus_grandisKCW7919887.969978.1955
AMTR_s00036p00179350amborella_trichopodaERN1537378.042364.2857cynara_cardunculusKVH9563381.491767.1271
AMTR_s00036p00179350amborella_trichopodaERN1537375.661462.4339trifolium_pratenseTp57577_TGAC_v2_mRNA1347480.337166.2921
AMTR_s00036p00179350amborella_trichopodaERN1537369.047659.5238gossypium_raimondiiKJB5474675.433565.0289
AMTR_s00036p00179350amborella_trichopodaERN1537337.03729.1005gossypium_raimondiiKJB1856474.866358.8235
AMTR_s00036p00179350amborella_trichopodaERN1537375.396864.0212arabidopsis_lyratafgenesh2_kg.4__508__AT2G25910.283.333370.7602
AMTR_s00036p00179350amborella_trichopodaERN1537371.957760.0529hordeum_vulgareHORVU.MOREX.r3.3HG0265190.181.927768.3735
AMTR_s00036p00179350amborella_trichopodaERN1537371.16458.9947oryza_barthiiOBART01G19860.180.780866.967
AMTR_s00036p00179350amborella_trichopodaERN1537374.074164.0212asparagus_officinalisONK7088885.365973.7805
AMTR_s00036p00179350amborella_trichopodaERN1537374.074161.6402musa_acuminataMa08_p05300.183.582169.5522
AMTR_s00036p00179350amborella_trichopodaERN1537375.132364.0212arabidopsis_hallerig29255.t283.040970.7602
AMTR_s00036p00179350amborella_trichopodaERN1537373.015959.5238eragrostis_tefEt_3B_028571.CDS80.232665.407
AMTR_s00036p00179350amborella_trichopodaERN1537373.015959.2593eragrostis_tefEt_3A_024146.CDS76.666762.2222
AMTR_s00036p00179350amborella_trichopodaERN1537361.904855.5556corymbia_citriodoracds-KAF8040703.188.301979.2453
AMTR_s00036p00179350amborella_trichopodaERN1537374.867764.2857rosa_chinensisPRQ2791182.991271.261
AMTR_s00036p00179350amborella_trichopodaERN1537343.121738.0952juglans_regiacds.Jr06_05150_p171.806263.4361
AMTR_s00036p00179350amborella_trichopodaERN1537376.984167.7249juglans_regiacds.Jr06_05140_p185.840775.5162
AMTR_s00036p00179350amborella_trichopodaERN1537372.751360.582saccharum_spontaneumSspon.03G0012990-1A-mRNA-1:cds80.882467.3529
AMTR_s00036p00179350amborella_trichopodaERN1537372.751360.582saccharum_spontaneumSspon.03G0012990-2B-mRNA-1:cds80.882467.3529
AMTR_s00036p00179350amborella_trichopodaERN1537372.486860.582triticum_dicoccoidesTRIDC3AG030570.182.035968.5629
AMTR_s00036p00179350amborella_trichopodaERN1537361.111150.7937triticum_dicoccoidesTRIDC3BG034880.487.169872.4528
AMTR_s00036p00179350amborella_trichopodaERN1537375.132364.0212brassica_oleraceaBo4g159910.183.040970.7602
AMTR_s00036p00179350amborella_trichopodaERN1537370.370458.7302oryza_indicaBGIOSGA001388-PA86.64572.3127
AMTR_s00036p00179350amborella_trichopodaERN1537377.513267.1958dioscorea_rotundataDRNTG_17252.180.494569.7802
AMTR_s00036p00179350amborella_trichopodaERN1537367.724957.1429leersia_perrieriLPERR01G17100.181.269868.5714
AMTR_s00036p00179350amborella_trichopodaERN1537337.566133.3333olea_europaeaOE9A104015C176.344167.7419
AMTR_s00036p00179350amborella_trichopodaERN1537373.54564.0212olea_europaeaOE9A004652C182.248571.5976
AMTR_s00036p00179350amborella_trichopodaERN1537373.015964.2857actinidia_chinensisPSR9689381.899172.1068
AMTR_s00036p00179350amborella_trichopodaERN1537375.132365.873actinidia_chinensisPSS1803683.040972.807
AMTR_s00036p00179350amborella_trichopodaERN1537375.925965.873actinidia_chinensisPSS0737883.918172.807
AMTR_s00036p00179350amborella_trichopodaERN1537375.925967.9894prunus_aviumPav_sc0004290.1_g230.1.mk:mrna83.673574.9271
AMTR_s00036p00179350amborella_trichopodaERN1537377.248768.5185quercus_subercds-POE61492.164.035156.7982
AMTR_s00036p00179350amborella_trichopodaERN1537374.338664.5503quercus_subercds-POE91252.183.63172.619
AMTR_s00036p00179350amborella_trichopodaERN1537375.132365.6085nicotiana_attenuataOIT0854184.523873.8095
AMTR_s00036p00179350amborella_trichopodaERN1537373.54562.6984nicotiana_attenuataOIT0525078.309966.7606
AMTR_s00036p00179350amborella_trichopodaERN1537376.719666.4021citrus_clementinaESR6401386.567274.9254
AMTR_s00036p00179350amborella_trichopodaERN1537375.132363.7566brassica_rapa_ro18A04p025540.1_BraROA.183.040970.4678
AMTR_s00036p00179350amborella_trichopodaERN1537372.751363.4921daucus_carotaKZN1179580.174969.9708
AMTR_s00036p00179350amborella_trichopodaERN1537376.45565.873nymphaea_colorataNC1G0132510.1:cds74.484564.1753
AMTR_s00036p00179350amborella_trichopodaERN1537376.190563.4921coffea_canephoraCDP0820985.459971.2166
AMTR_s00036p00179350amborella_trichopodaERN1537372.486860.8466aegilops_tauschiiAET3Gv20507200.282.530169.2771
AMTR_s00036p00179350amborella_trichopodaERN1537375.661466.6667pistacia_veracds-EVM0008848.185.11975
AMTR_s00036p00179350amborella_trichopodaERN1537368.518555.5556digitaria_exilisDexi5B01G0018110.1:cds80.434865.2174
AMTR_s00036p00179350amborella_trichopodaERN1537360.58247.3545digitaria_exilisDexi5A01G0017740.1:cds80.918763.2509
AMTR_s00036p00179350amborella_trichopodaERN1537372.222259.5238oryza_sativaOs01t0566900-0181.008966.7656
AMTR_s00036p00179350amborella_trichopodaERN1537372.486859.7884panicum_halliiPUZ5617881.547667.2619
AMTR_s00036p00179350amborella_trichopodaERN1537374.603264.8148quercus_lobataQL05p017273:mrna83.928672.9167
AMTR_s00036p00179350amborella_trichopodaERN1537376.984167.7249quercus_lobataQL02p001773:mrna84.839774.6356
AMTR_s00036p00179350amborella_trichopodaERN1537374.074164.5503quercus_lobataQL05p017569:mrna83.333372.619
AMTR_s00036p00179350amborella_trichopodaERN1537362.169351.0582eragrostis_curvulaTVU3415679.66165.4237
AMTR_s00036p00179350amborella_trichopodaERN1537374.338662.4339camelina_sativaCsa09g092120.182.404769.2082
AMTR_s00036p00179350amborella_trichopodaERN1537374.867763.2275camelina_sativaCsa16g047540.182.991270.088
AMTR_s00036p00179350amborella_trichopodaERN1537375.132363.2275camelina_sativaCsa07g056930.183.284570.088
AMTR_s00036p00179350amborella_trichopodaERN1537366.402153.1746selaginella_moellendorffiiEFJ2273176.524461.2805
AMTR_s00036p00179350amborella_trichopodaERN1537366.137652.9101selaginella_moellendorffiiEFJ0487776.219560.9756
AMTR_s00036p00179350amborella_trichopodaERN1537380.423367.1958vitis_viniferaVitvi09g00226_P00182.833869.2098
AMTR_s00036p00179350amborella_trichopodaERN1537377.248768.5185vitis_viniferaVitvi04g00051_P00185.630575.9531
AMTR_s00036p00179350amborella_trichopodaERN1537374.603263.2275eutrema_salsugineumESQ5028582.697970.088
AMTR_s00036p00179350amborella_trichopodaERN1537373.015959.7884echinochloa_crusgalliscaffold86.59.cds81.899167.0623
AMTR_s00036p00179350amborella_trichopodaERN1537372.751359.7884echinochloa_crusgalliscaffold11.131.cds81.845267.2619
AMTR_s00036p00179350amborella_trichopodaERN1537372.486859.2593echinochloa_crusgalliscaffold46.168.cds81.547666.6667
AMTR_s00036p00179350amborella_trichopodaERN1537373.280460.8466echinochloa_crusgalliscaffold305.22.cds80.994167.2515
AMTR_s00036p00179350amborella_trichopodaERN1537376.984166.9312corchorus_capsularisOMO6691685.840774.6313
AMTR_s00036p00179350amborella_trichopodaERN1537369.047655.5556corchorus_capsularisOMO7089670.731756.9106
AMTR_s00036p00179350amborella_trichopodaERN1537373.809563.2275fraxinus_excelsiorFRAEX38873_v2_000005210.1.cds82.544470.7101
AMTR_s00036p00179350amborella_trichopodaERN1537376.45564.5503citrullus_lanatusCla97C08G160540.18571.7647
AMTR_s00036p00179350amborella_trichopodaERN1537373.280459.5238oryza_nivaraONIVA01G07460.172.135458.5938

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression