Description

Ensembl ID AMTR_s00029p00103360 Gene ID Accession -
Symbol Alias - Full Name hypothetical protein
Status Confidence Length 2203 bases Strand Plus strand
Position AmTr_v1.0_scaffold00029 : 1267539 - 1269741 RNA binding domain FF
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN09469 FF PF01846 9.1e-14 1
ERN09469 FF PF01846 9.1e-14 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN09469 606 201aa ERN09469

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00029p00103360amborella_trichopodaERN094680.2475250.123762amborella_trichopodaERN094690.9950250.497512

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00029p00103360amborella_trichopodaERN0946976.119462.6866papaver_somniferumRZC7500215.724612.9496
AMTR_s00029p00103360amborella_trichopodaERN0946976.616963.1841papaver_somniferumRZC7137215.827313.0524
AMTR_s00029p00103360amborella_trichopodaERN0946974.129461.194marchantia_polymorphaPTQ3897915.569512.8527
AMTR_s00029p00103360amborella_trichopodaERN0946978.109561.194cannabis_sativa_femalecds.novel_model_6754_5bd9a17a39.546630.9824
AMTR_s00029p00103360amborella_trichopodaERN0946979.104562.1891ficus_caricaFCD_00011928-RA:cds18.424114.4844
AMTR_s00029p00103360amborella_trichopodaERN0946977.114463.1841beta_vulgarisKMT0265917.396214.2536
AMTR_s00029p00103360amborella_trichopodaERN0946977.611965.6716theobroma_cacaoEOY0115419.117616.1765
AMTR_s00029p00103360amborella_trichopodaERN0946975.124460.199cucumis_meloMELO3C024279.2.117.848714.3026
AMTR_s00029p00103360amborella_trichopodaERN0946971.144357.2139arabidopsis_thalianaAT3G19840.117.125713.7725
AMTR_s00029p00103360amborella_trichopodaERN0946978.109560.6965populus_trichocarpaPotri.010G170400.1.v4.116.252612.6294
AMTR_s00029p00103360amborella_trichopodaERN0946974.626960.199cucumis_sativusKGN4540917.751514.3195
AMTR_s00029p00103360amborella_trichopodaERN0946972.636857.7114brassica_junceacds.BjuA05g25290S17.69714.0606
AMTR_s00029p00103360amborella_trichopodaERN0946972.636858.209brassica_napusCDY2459817.675514.1646
AMTR_s00029p00103360amborella_trichopodaERN0946972.636857.7114brassica_napusCDY2535117.675514.0436
AMTR_s00029p00103360amborella_trichopodaERN0946977.114464.6766prunus_persicaONI3203015.438212.9482
AMTR_s00029p00103360amborella_trichopodaERN0946956.716445.2736cajanus_cajanC.cajan_21366.t12.41839.91285
AMTR_s00029p00103360amborella_trichopodaERN0946900malus_domestica_goldenmRNA:MD13G000710000
AMTR_s00029p00103360amborella_trichopodaERN0946978.60763.1841malus_domestica_goldenmRNA:MD16G000520016.952813.6266
AMTR_s00029p00103360amborella_trichopodaERN0946977.114463.1841malus_domestica_goldenmRNA:MD13G000720052.542443.0508
AMTR_s00029p00103360amborella_trichopodaERN0946977.611964.6766glycine_maxKRH2918216.115713.4298
AMTR_s00029p00103360amborella_trichopodaERN0946977.114464.1791glycine_maxKRH2919715.816313.1633
AMTR_s00029p00103360amborella_trichopodaERN0946979.104566.1692glycine_maxKRH2420617.096814.3011
AMTR_s00029p00103360amborella_trichopodaERN0946977.114464.6766prunus_dulcisVVA1472515.577913.0653
AMTR_s00029p00103360amborella_trichopodaERN0946979.60264.1791medicago_truncatulaAES8939816.68413.4515
AMTR_s00029p00103360amborella_trichopodaERN0946974.129461.194lupinus_angustifoliusOIV9957916.722813.8047
AMTR_s00029p00103360amborella_trichopodaERN0946968.159249.7512physcomitrium_patensPp3c11_2890V3.315.239211.1235
AMTR_s00029p00103360amborella_trichopodaERN0946970.149352.2388physcomitrium_patensPp3c7_20890V3.215.789511.7581
AMTR_s00029p00103360amborella_trichopodaERN0946979.60264.6766phaseolus_vulgarisESW0365716.376713.306
AMTR_s00029p00103360amborella_trichopodaERN0946946.268737.8109pisum_sativumPsat7g176560.1.cds53.757243.9306
AMTR_s00029p00103360amborella_trichopodaERN0946977.114462.1891pisum_sativumPsat5g190360.2.cds52.90142.6621
AMTR_s00029p00103360amborella_trichopodaERN094698.955224.47761pisum_sativumPsat7g176600.2.cds2.486191.24309
AMTR_s00029p00103360amborella_trichopodaERN0946979.104565.6716vigna_angularisKOM5104416.307713.5385
AMTR_s00029p00103360amborella_trichopodaERN0946979.104565.1741vigna_unguiculataVigun11g191500.1.v1.216.274313.4084
AMTR_s00029p00103360amborella_trichopodaERN0946978.109564.6766manihot_esculentaOAY5451326.254221.7391
AMTR_s00029p00103360amborella_trichopodaERN0946970.646858.209solanum_lycopersicumSolyc04g008700.3.113.653811.25
AMTR_s00029p00103360amborella_trichopodaERN0946974.129460.199capsicum_annuumPHT8116714.46611.7476
AMTR_s00029p00103360amborella_trichopodaERN094691.492540vigna_radiataVradi02g02490.10.5033560
AMTR_s00029p00103360amborella_trichopodaERN0946976.119463.1841sesamum_indicumSIN_1015363.t18.478315.3382
AMTR_s00029p00103360amborella_trichopodaERN0946974.129457.2139lactuca_sativacds-PLY87871.116.178112.4864
AMTR_s00029p00103360amborella_trichopodaERN094694.975121.49254helianthus_annuusmRNA:HanXRQr2_Chr13g06154113.267970.980392
AMTR_s00029p00103360amborella_trichopodaERN0946951.243836.3184helianthus_annuusmRNA:HanXRQr2_Chr13g061539166.883147.4026
AMTR_s00029p00103360amborella_trichopodaERN0946972.139355.7214helianthus_annuusmRNA:HanXRQr2_Chr17g078882114.780811.4169
AMTR_s00029p00103360amborella_trichopodaERN0946967.164254.2289avena_sativa_ot3098cds.AVESA.00001b.r3.1Cg0001166.912.453910.0554
AMTR_s00029p00103360amborella_trichopodaERN0946968.159253.7313avena_sativa_ot3098cds.AVESA.00001b.r3.1Ag0000580.512.720510.0279
AMTR_s00029p00103360amborella_trichopodaERN0946967.661753.7313avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0000544.512.674710.0652
AMTR_s00029p00103360amborella_trichopodaERN0946964.179150.2488lolium_perennecds.KYUSt_chr1.1818413.451510.5318
AMTR_s00029p00103360amborella_trichopodaERN0946969.651756.2189oryza_longistaminataKN539314.1_FGP00714.583311.7708
AMTR_s00029p00103360amborella_trichopodaERN0946967.164254.2289avena_sativa_sangAVESA.00010b.r2.1CG0093410.4.CDS12.993310.4909
AMTR_s00029p00103360amborella_trichopodaERN094692.487561.49254avena_sativa_sangAVESA.00010b.r2.1DG0183700.1.CDS0.843170.505902
AMTR_s00029p00103360amborella_trichopodaERN094690.9950250avena_sativa_sangAVESA.00010b.r2.1AG0064870.1.CDS0.3311260
AMTR_s00029p00103360amborella_trichopodaERN0946968.656755.2239oryza_rufipogonORUFI10G14530.212.789610.2873
AMTR_s00029p00103360amborella_trichopodaERN0946969.154256.2189oryza_brachyanthaOB10G20880.134.405927.9703
AMTR_s00029p00103360amborella_trichopodaERN0946968.656756.7164oryza_punctataOPUNC10G12170.112.789610.5653
AMTR_s00029p00103360amborella_trichopodaERN0946971.144356.7164setaria_italicaKQK8864613.63210.8675
AMTR_s00029p00103360amborella_trichopodaERN0946971.641856.7164setaria_viridisTKV9326713.090910.3636
AMTR_s00029p00103360amborella_trichopodaERN0946970.149356.7164sorghum_bicolorOQU9161312.794910.3448
AMTR_s00029p00103360amborella_trichopodaERN0946966.169254.2289triticum_turgidumTRITD1Av1G103070.111.96049.80216
AMTR_s00029p00103360amborella_trichopodaERN0946966.666756.2189triticum_turgidumTRITD1Bv1G104130.412.713510.7211
AMTR_s00029p00103360amborella_trichopodaERN0946966.666754.2289secale_cerealeSECCE1Rv1G0025750.112.725510.3514
AMTR_s00029p00103360amborella_trichopodaERN0946965.671653.7313triticum_aestivumTraesCS1D02G157600.212.547510.2662
AMTR_s00029p00103360amborella_trichopodaERN0946967.661756.2189triticum_aestivumTraesCS1B02G176100.213.001910.8031
AMTR_s00029p00103360amborella_trichopodaERN0946968.159255.2239triticum_aestivumTraesCS1A02G160500.212.900210.452
AMTR_s00029p00103360amborella_trichopodaERN0946969.651756.7164zea_maysZm00001eb221360_P00312.692710.3354
AMTR_s00029p00103360amborella_trichopodaERN0946973.134359.7015ananas_comosusAco007697.1.mrna114.161811.5607
AMTR_s00029p00103360amborella_trichopodaERN0946935.820916.9154caenorhabditis_elegansZK1127.9a.17.877463.71991
AMTR_s00029p00103360amborella_trichopodaERN0946936.815919.9005drosophila_melanogasterFBpp02921356.589493.56189
AMTR_s00029p00103360amborella_trichopodaERN0946978.60763.1841chenopodium_quinoaAUR62017662-RA:cds16.934613.612
AMTR_s00029p00103360amborella_trichopodaERN0946966.169246.2687chara_brauniiGBG690787.100914.9653
AMTR_s00029p00103360amborella_trichopodaERN094690.9950250.497512corylus_avellanaCav04g18080.t10.6211180.310559
AMTR_s00029p00103360amborella_trichopodaERN0946976.616962.6866corylus_avellanaCav04g18090.t152.02742.5676
AMTR_s00029p00103360amborella_trichopodaERN0946969.154255.2239brachypodium_distachyonKQJ9717915.72412.5566
AMTR_s00029p00103360amborella_trichopodaERN0946969.154255.7214oryza_glumipatulaOGLUM10G13590.212.882310.38
AMTR_s00029p00103360amborella_trichopodaERN0946974.129460.199ipomoea_trilobaitb04g07240.t215.392612.5
AMTR_s00029p00103360amborella_trichopodaERN0946927.860720.8955kalanchoe_fedtschenkoiKaladp0070s0151.1.v1.16.106874.58015
AMTR_s00029p00103360amborella_trichopodaERN0946968.159255.2239triticum_urartuTuG1812G0100001916.01.T0112.900210.452
AMTR_s00029p00103360amborella_trichopodaERN0946978.60761.194eucalyptus_grandisKCW6504016.089612.5255
AMTR_s00029p00103360amborella_trichopodaERN0946976.616958.209cynara_cardunculusKVH9577616.348212.4204
AMTR_s00029p00103360amborella_trichopodaERN0946979.104564.1791trifolium_pratenseTp57577_TGAC_v2_mRNA2230017.945814.5598
AMTR_s00029p00103360amborella_trichopodaERN0946977.611965.6716gossypium_raimondiiKJB1527017.567614.8649
AMTR_s00029p00103360amborella_trichopodaERN0946972.636856.7164arabidopsis_lyratascaffold_302346.117.48513.6527
AMTR_s00029p00103360amborella_trichopodaERN0946967.164253.7313hordeum_vulgareHORVU.MOREX.r3.1HG0044700.112.759910.2079
AMTR_s00029p00103360amborella_trichopodaERN0946969.651756.2189oryza_barthiiOBART10G13750.112.97510.4727
AMTR_s00029p00103360amborella_trichopodaERN0946977.611964.6766asparagus_officinalisONK5524614.117611.7647
AMTR_s00029p00103360amborella_trichopodaERN0946974.626961.6915musa_acuminataMa08_p03940.113.297910.9929
AMTR_s00029p00103360amborella_trichopodaERN094691.990051.49254arabidopsis_hallerig28992.t10.6688960.501672
AMTR_s00029p00103360amborella_trichopodaERN0946971.641855.7214arabidopsis_hallerig28991.t177.419460.2151
AMTR_s00029p00103360amborella_trichopodaERN0946952.238840.2985eragrostis_tefEt_1A_005892.CDS11.07598.5443
AMTR_s00029p00103360amborella_trichopodaERN0946969.651757.2139eragrostis_tefEt_1B_010767.CDS13.474511.0683
AMTR_s00029p00103360amborella_trichopodaERN0946978.60761.194corymbia_citriodoracds-KAF8021719.116.073212.5127
AMTR_s00029p00103360amborella_trichopodaERN0946976.119460.6965rosa_chinensisPRQ4139415.805812.6033
AMTR_s00029p00103360amborella_trichopodaERN0946979.60266.1692juglans_regiacds.Jr13_19520_p115.825913.1553
AMTR_s00029p00103360amborella_trichopodaERN0946979.60266.1692juglans_regiacds.Jr13_19530_p115.794713.1293
AMTR_s00029p00103360amborella_trichopodaERN0946970.149357.2139saccharum_spontaneumSspon.01G0019810-2P-mRNA-1:cds38.108131.0811
AMTR_s00029p00103360amborella_trichopodaERN094690.9950250.497512saccharum_spontaneumSspon.01G0019810-1A-mRNA-10.7352940.367647
AMTR_s00029p00103360amborella_trichopodaERN0946970.149357.2139saccharum_spontaneumSspon.01G0019810-1T-mRNA-1:cds12.645710.3139
AMTR_s00029p00103360amborella_trichopodaERN0946970.149357.2139saccharum_spontaneumSspon.01G0019810-1P-mRNA-1:cds27.976222.8175
AMTR_s00029p00103360amborella_trichopodaERN0946969.651756.7164saccharum_spontaneumSspon.01G0019810-3C-mRNA-1:cds12.578610.2426
AMTR_s00029p00103360amborella_trichopodaERN0946968.159255.2239triticum_dicoccoidesTRIDC1AG024420.912.756110.3352
AMTR_s00029p00103360amborella_trichopodaERN0946966.666756.2189triticum_dicoccoidesTRIDC1BG029570.212.546810.5805
AMTR_s00029p00103360amborella_trichopodaERN0946972.636858.209brassica_oleraceaBo5g112470.116.723913.4021
AMTR_s00029p00103360amborella_trichopodaERN0946969.154255.7214oryza_indicaBGIOSGA031663-PA12.894210.3896
AMTR_s00029p00103360amborella_trichopodaERN0946938.308520.8955ciona_savignyiENSCSAVP0000001483411.57896.31579
AMTR_s00029p00103360amborella_trichopodaERN0946975.621961.6915dioscorea_rotundataDRNTG_25238.113.523111.032
AMTR_s00029p00103360amborella_trichopodaERN0946969.154255.7214leersia_perrieriLPERR10G10230.113.027210.4967
AMTR_s00029p00103360amborella_trichopodaERN0946974.129459.204olea_europaeaOE9A080131C114.855411.8644
AMTR_s00029p00103360amborella_trichopodaERN0946972.636859.7015actinidia_chinensisPSR9098218.04714.8331
AMTR_s00029p00103360amborella_trichopodaERN0946977.114464.6766prunus_aviumPav_sc0000410.1_g290.1.mk:mrna15.688313.1579
AMTR_s00029p00103360amborella_trichopodaERN0946979.60264.1791quercus_subercds-POF22764.115.209112.2624
AMTR_s00029p00103360amborella_trichopodaERN0946972.636860.6965nicotiana_attenuataOIT0557438.421132.1053
AMTR_s00029p00103360amborella_trichopodaERN094691.990051.49254nicotiana_attenuataOIT055750.5822420.436681
AMTR_s00029p00103360amborella_trichopodaERN0946978.109563.1841citrus_clementinaESR5072815.46812.5123
AMTR_s00029p00103360amborella_trichopodaERN0946972.636858.209brassica_rapa_ro18A05p039030.1_BraROA.116.898113.5417
AMTR_s00029p00103360amborella_trichopodaERN0946974.626960.199daucus_carotaKZN0576217.835914.3876
AMTR_s00029p00103360amborella_trichopodaERN0946981.094566.6667nymphaea_colorataNC2G0287300.1:cds13.273610.9121
AMTR_s00029p00103360amborella_trichopodaERN094696.965174.47761aegilops_tauschiiAET1Gv20412800.21.487780.956429
AMTR_s00029p00103360amborella_trichopodaERN094690.9950250.497512pistacia_veracds-EVM0013088.11.104970.552486
AMTR_s00029p00103360amborella_trichopodaERN0946910.94537.46269pistacia_veracds-EVM0009177.16.586834.49102
AMTR_s00029p00103360amborella_trichopodaERN094692.487560.995025pistacia_veracds-EVM0015749.11.400560.560224
AMTR_s00029p00103360amborella_trichopodaERN0946949.751238.3085pistacia_veracds-EVM0010484.114.836811.4243
AMTR_s00029p00103360amborella_trichopodaERN094690.9950250pistacia_veracds-EVM0028587.10.4291850
AMTR_s00029p00103360amborella_trichopodaERN0946931.343318.408digitaria_exilisDexi9B01G0019440.1:cds7.806694.58488
AMTR_s00029p00103360amborella_trichopodaERN0946911.94039.45274digitaria_exilisDexi9A01G0020140.1:cds3.120942.47074
AMTR_s00029p00103360amborella_trichopodaERN0946969.154255.7214oryza_sativaOs10t0485000-0112.894210.3896
AMTR_s00029p00103360amborella_trichopodaERN0946970.149356.7164panicum_halliiPUZ3855715.968312.9105
AMTR_s00029p00103360amborella_trichopodaERN0946979.104564.6766quercus_lobataQL03p043450:mrna58.671647.9705
AMTR_s00029p00103360amborella_trichopodaERN094691.990050.995025quercus_lobataQL03p043467:mrna0.5242460.262123
AMTR_s00029p00103360amborella_trichopodaERN0946970.149356.2189eragrostis_curvulaTVU3031513.202210.5805
AMTR_s00029p00103360amborella_trichopodaERN0946969.651755.2239eragrostis_curvulaTVU0067613.096410.3835
AMTR_s00029p00103360amborella_trichopodaERN0946972.636856.7164camelina_sativaCsa19g027550.117.360313.5553
AMTR_s00029p00103360amborella_trichopodaERN0946972.139356.2189camelina_sativaCsa01g022860.117.241413.4364
AMTR_s00029p00103360amborella_trichopodaERN0946972.139356.2189camelina_sativaCsa15g027880.117.241413.4364
AMTR_s00029p00103360amborella_trichopodaERN0946968.656754.2289selaginella_moellendorffiiEFJ2070617.737814.0103
AMTR_s00029p00103360amborella_trichopodaERN0946968.656753.7313selaginella_moellendorffiiEFJ3271917.380413.602
AMTR_s00029p00103360amborella_trichopodaERN0946977.114462.6866vitis_viniferaVitvi01g01413_P00114.194111.5385
AMTR_s00029p00103360amborella_trichopodaERN0946973.631859.204eutrema_salsugineumESQ4790419.654715.8035
AMTR_s00029p00103360amborella_trichopodaERN0946971.144356.7164echinochloa_crusgalliscaffold165.61.cds13.047410.4015
AMTR_s00029p00103360amborella_trichopodaERN0946971.144357.2139echinochloa_crusgalliscaffold112.233.cds13.035610.4831
AMTR_s00029p00103360amborella_trichopodaERN0946970.149355.7214echinochloa_crusgalliscaffold27.744.cds12.912110.2564
AMTR_s00029p00103360amborella_trichopodaERN0946979.60264.6766corchorus_capsularisOMO6072417.857114.5089
AMTR_s00029p00103360amborella_trichopodaERN0946975.621959.7015fraxinus_excelsiorFRAEX38873_v2_000347410.1.cds15.291812.0724
AMTR_s00029p00103360amborella_trichopodaERN0946965.671651.2438fraxinus_excelsiorFRAEX38873_v2_000037140.2.cds13.483110.5209
AMTR_s00029p00103360amborella_trichopodaERN0946975.621961.6915citrullus_lanatusCla97C09G163800.117.966914.6572
AMTR_s00029p00103360amborella_trichopodaERN0946969.154255.7214oryza_nivaraONIVA10G15140.39.533617.68176

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression