Description

Ensembl ID AMTR_s00029p00102340 Gene ID Accession -
Symbol Alias - Full Name hypothetical protein
Status Confidence Length 8703 bases Strand Plus strand
Position AmTr_v1.0_scaffold00029 : 1251405 - 1260107 RNA binding domain FF
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN09468 FF PF01846 5.3e-19 1
ERN09468 FF PF01846 5.3e-19 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN09468 2427 808aa ERN09468

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00029p00102340amborella_trichopodaERN094690.9950250.497512amborella_trichopodaERN094680.2475250.123762

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00029p00102340amborella_trichopodaERN0946850.247540.4703papaver_somniferumRZC7500241.726633.6074
AMTR_s00029p00102340amborella_trichopodaERN0946849.628739.8515papaver_somniferumRZC7137241.212733.0935
AMTR_s00029p00102340amborella_trichopodaERN0946840.594131.1881marchantia_polymorphaPTQ3897934.273826.3323
AMTR_s00029p00102340amborella_trichopodaERN0946812.871311.2624cannabis_sativa_femalecds.novel_model_6754_5bd9a17a26.196522.9219
AMTR_s00029p00102340amborella_trichopodaERN0946845.049536.0149ficus_caricaFCD_00011928-RA:cds42.178433.7196
AMTR_s00029p00102340amborella_trichopodaERN0946848.143637.005beta_vulgarisKMT0265943.658833.5578
AMTR_s00029p00102340amborella_trichopodaERN0946845.049536.7574theobroma_cacaoEOY0115444.607836.3971
AMTR_s00029p00102340amborella_trichopodaERN0946846.287137.005cucumis_meloMELO3C024279.2.144.20835.3428
AMTR_s00029p00102340amborella_trichopodaERN0946843.316833.2921arabidopsis_thalianaAT3G19840.141.916232.2156
AMTR_s00029p00102340amborella_trichopodaERN0946848.019837.995populus_trichocarpaPotri.010G170400.1.v4.140.165631.7805
AMTR_s00029p00102340amborella_trichopodaERN0946846.039636.7574cucumis_sativusKGN4540944.023735.1479
AMTR_s00029p00102340amborella_trichopodaERN0946842.945532.0545brassica_junceacds.BjuA05g25290S42.060631.3939
AMTR_s00029p00102340amborella_trichopodaERN0946843.564432.0545brassica_napusCDY2459842.61531.3559
AMTR_s00029p00102340amborella_trichopodaERN0946843.564431.9307brassica_napusCDY2535142.61531.2349
AMTR_s00029p00102340amborella_trichopodaERN0946854.826741.5842prunus_persicaONI3203044.123533.4661
AMTR_s00029p00102340amborella_trichopodaERN0946851.485139.1089cajanus_cajanC.cajan_21366.t45.315934.4227
AMTR_s00029p00102340amborella_trichopodaERN0946829.331722.7723malus_domestica_goldenmRNA:MD13G000710063.709749.4624
AMTR_s00029p00102340amborella_trichopodaERN0946851.237638.8614malus_domestica_goldenmRNA:MD16G000520044.420633.691
AMTR_s00029p00102340amborella_trichopodaERN094680.6188120.49505malus_domestica_goldenmRNA:MD13G00072001.694921.35593
AMTR_s00029p00102340amborella_trichopodaERN0946850.866338.3663glycine_maxKRH2918242.458732.0248
AMTR_s00029p00102340amborella_trichopodaERN0946851.113938.4901glycine_maxKRH2919742.142931.7347
AMTR_s00029p00102340amborella_trichopodaERN0946848.514937.7475glycine_maxKRH2420642.150532.7957
AMTR_s00029p00102340amborella_trichopodaERN0946855.19841.9554prunus_dulcisVVA1472544.824134.0704
AMTR_s00029p00102340amborella_trichopodaERN0946850.247538.1188medicago_truncatulaAES8939842.335832.1168
AMTR_s00029p00102340amborella_trichopodaERN0946847.648536.2624lupinus_angustifoliusOIV9957943.209932.8844
AMTR_s00029p00102340amborella_trichopodaERN0946838.861429.3317physcomitrium_patensPp3c11_2890V3.334.927726.3626
AMTR_s00029p00102340amborella_trichopodaERN0946839.975230.3218physcomitrium_patensPp3c7_20890V3.236.170227.4356
AMTR_s00029p00102340amborella_trichopodaERN0946851.485138.2426phaseolus_vulgarisESW0365742.579331.6274
AMTR_s00029p00102340amborella_trichopodaERN0946800pisum_sativumPsat7g176560.1.cds00
AMTR_s00029p00102340amborella_trichopodaERN094680.9900990.618812pisum_sativumPsat5g190360.2.cds2.730381.70648
AMTR_s00029p00102340amborella_trichopodaERN094685038.2426pisum_sativumPsat7g176600.2.cds55.801142.6796
AMTR_s00029p00102340amborella_trichopodaERN0946851.113938.8614vigna_angularisKOM5104442.35932.2051
AMTR_s00029p00102340amborella_trichopodaERN0946851.485138.7376vigna_unguiculataVigun11g191500.1.v1.242.579332.0368
AMTR_s00029p00102340amborella_trichopodaERN0946829.084222.5248manihot_esculentaOAY5451339.297730.4348
AMTR_s00029p00102340amborella_trichopodaERN0946850.123836.0149solanum_lycopersicumSolyc04g008700.3.138.942327.9808
AMTR_s00029p00102340amborella_trichopodaERN0946849.133737.1287capsicum_annuumPHT8116738.543729.1262
AMTR_s00029p00102340amborella_trichopodaERN0946837.871326.6089vigna_radiataVradi02g02490.151.342336.0738
AMTR_s00029p00102340amborella_trichopodaERN0946843.193134.1584sesamum_indicumSIN_1015363.t42.149833.3333
AMTR_s00029p00102340amborella_trichopodaERN0946842.079231.6832lactuca_sativacds-PLY87871.136.916427.7959
AMTR_s00029p00102340amborella_trichopodaERN0946818.811915.5941helianthus_annuusmRNA:HanXRQr2_Chr13g061541149.673241.1765
AMTR_s00029p00102340amborella_trichopodaERN094680.495050.123762helianthus_annuusmRNA:HanXRQr2_Chr13g06153912.59740.649351
AMTR_s00029p00102340amborella_trichopodaERN0946847.029736.5099helianthus_annuusmRNA:HanXRQr2_Chr17g078882138.73630.0714
AMTR_s00029p00102340amborella_trichopodaERN0946846.782232.9208avena_sativa_ot3098cds.AVESA.00001b.r3.1Cg0001166.934.870824.5387
AMTR_s00029p00102340amborella_trichopodaERN0946846.534732.797avena_sativa_ot3098cds.AVESA.00001b.r3.1Ag0000580.534.911824.6054
AMTR_s00029p00102340amborella_trichopodaERN0946846.658432.6733avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0000544.535.135124.6039
AMTR_s00029p00102340amborella_trichopodaERN0946842.945530.5693lolium_perennecds.KYUSt_chr1.1818436.183525.756
AMTR_s00029p00102340amborella_trichopodaERN0946843.316832.4257oryza_longistaminataKN539314.1_FGP00736.458327.2917
AMTR_s00029p00102340amborella_trichopodaERN0946846.658432.6733avena_sativa_sangAVESA.00010b.r2.1CG0093410.4.CDS36.284925.409
AMTR_s00029p00102340amborella_trichopodaERN0946835.024823.7624avena_sativa_sangAVESA.00010b.r2.1DG0183700.1.CDS47.723432.3777
AMTR_s00029p00102340amborella_trichopodaERN0946840.222828.0941avena_sativa_sangAVESA.00010b.r2.1AG0064870.1.CDS53.807937.5828
AMTR_s00029p00102340amborella_trichopodaERN0946845.420833.4158oryza_rufipogonORUFI10G14530.234.01325.0232
AMTR_s00029p00102340amborella_trichopodaERN0946814.356411.7574oryza_brachyanthaOB10G20880.128.712923.5149
AMTR_s00029p00102340amborella_trichopodaERN0946845.049532.797oryza_punctataOPUNC10G12170.133.734924.5598
AMTR_s00029p00102340amborella_trichopodaERN0946845.173332.5495setaria_italicaKQK8864634.79525.0715
AMTR_s00029p00102340amborella_trichopodaERN0946847.153534.1584setaria_viridisTKV9326734.636425.0909
AMTR_s00029p00102340amborella_trichopodaERN0946847.153534.2822sorghum_bicolorOQU9161334.573525.1361
AMTR_s00029p00102340amborella_trichopodaERN0946845.420831.8069triticum_turgidumTRITD1Av1G103070.133.003623.1115
AMTR_s00029p00102340amborella_trichopodaERN0946845.915832.302triticum_turgidumTRITD1Bv1G104130.435.199224.7628
AMTR_s00029p00102340amborella_trichopodaERN0946845.792132.302secale_cerealeSECCE1Rv1G0025750.135.137724.7863
AMTR_s00029p00102340amborella_trichopodaERN0946845.792132.302triticum_aestivumTraesCS1D02G157600.235.171124.8099
AMTR_s00029p00102340amborella_trichopodaERN0946845.792132.302triticum_aestivumTraesCS1B02G176100.235.372824.9522
AMTR_s00029p00102340amborella_trichopodaERN0946845.915832.0545triticum_aestivumTraesCS1A02G160500.234.934124.3879
AMTR_s00029p00102340amborella_trichopodaERN0946847.524833.9109zea_maysZm00001eb221360_P00334.814124.8413
AMTR_s00029p00102340amborella_trichopodaERN0946847.277236.2624ananas_comosusAco007697.1.mrna136.801528.2274
AMTR_s00029p00102340amborella_trichopodaERN0946818.688112.1287caenorhabditis_elegansZK1127.9a.116.520810.7221
AMTR_s00029p00102340amborella_trichopodaERN0946821.163413.8614drosophila_melanogasterFBpp029213515.22719.97329
AMTR_s00029p00102340amborella_trichopodaERN0946846.410936.2624chenopodium_quinoaAUR62017662-RA:cds40.192931.4041
AMTR_s00029p00102340amborella_trichopodaERN0946843.564432.9208chara_brauniiGBG6907818.793414.2018
AMTR_s00029p00102340amborella_trichopodaERN0946829.207923.8861corylus_avellanaCav04g18080.t173.291959.9379
AMTR_s00029p00102340amborella_trichopodaERN094681.608910.866337corylus_avellanaCav04g18090.t14.391892.36486
AMTR_s00029p00102340amborella_trichopodaERN0946842.574330.5693brachypodium_distachyonKQJ9717938.91427.9412
AMTR_s00029p00102340amborella_trichopodaERN0946845.29733.1683oryza_glumipatulaOGLUM10G13590.233.920324.8378
AMTR_s00029p00102340amborella_trichopodaERN0946847.89638.1188ipomoea_trilobaitb04g07240.t239.979331.8182
AMTR_s00029p00102340amborella_trichopodaERN0946843.440631.4356kalanchoe_fedtschenkoiKaladp0070s0151.1.v1.138.27727.699
AMTR_s00029p00102340amborella_trichopodaERN0946845.915832.0545triticum_urartuTuG1812G0100001916.01.T0134.934124.3879
AMTR_s00029p00102340amborella_trichopodaERN0946850.371338.8614eucalyptus_grandisKCW6504041.44631.9756
AMTR_s00029p00102340amborella_trichopodaERN0946850.123837.3762cynara_cardunculusKVH9577642.993632.0594
AMTR_s00029p00102340amborella_trichopodaERN0946845.420834.7772trifolium_pratenseTp57577_TGAC_v2_mRNA2230041.422131.7156
AMTR_s00029p00102340amborella_trichopodaERN0946847.648538.1188gossypium_raimondiiKJB1527043.355934.6847
AMTR_s00029p00102340amborella_trichopodaERN0946843.069333.5396arabidopsis_lyratascaffold_302346.141.676632.4551
AMTR_s00029p00102340amborella_trichopodaERN0946845.668331.9307hordeum_vulgareHORVU.MOREX.r3.1HG0044700.134.877124.3856
AMTR_s00029p00102340amborella_trichopodaERN0946845.29733.4158oryza_barthiiOBART10G13750.133.920325.0232
AMTR_s00029p00102340amborella_trichopodaERN0946850.618836.8812asparagus_officinalisONK5524637.013626.9683
AMTR_s00029p00102340amborella_trichopodaERN0946848.762436.5099musa_acuminataMa08_p03940.134.929126.1525
AMTR_s00029p00102340amborella_trichopodaERN0946842.821833.7871arabidopsis_hallerig28992.t157.859545.6522
AMTR_s00029p00102340amborella_trichopodaERN094681.237620.618812arabidopsis_hallerig28991.t15.376342.68817
AMTR_s00029p00102340amborella_trichopodaERN0946846.905934.5297eragrostis_tefEt_1A_005892.CDS39.978929.4304
AMTR_s00029p00102340amborella_trichopodaERN0946847.89634.901eragrostis_tefEt_1B_010767.CDS37.247427.1415
AMTR_s00029p00102340amborella_trichopodaERN0946850.742639.1089corymbia_citriodoracds-KAF8021719.141.709132.1465
AMTR_s00029p00102340amborella_trichopodaERN0946850.990139.3564rosa_chinensisPRQ4139442.56232.8512
AMTR_s00029p00102340amborella_trichopodaERN0946854.826742.0792juglans_regiacds.Jr13_19520_p143.81833.6301
AMTR_s00029p00102340amborella_trichopodaERN0946854.826742.0792juglans_regiacds.Jr13_19530_p143.731533.5637
AMTR_s00029p00102340amborella_trichopodaERN0946813.737611.3861saccharum_spontaneumSspon.01G0019810-2P-mRNA-1:cds3024.8649
AMTR_s00029p00102340amborella_trichopodaERN0946824.876219.1832saccharum_spontaneumSspon.01G0019810-1A-mRNA-173.897156.9853
AMTR_s00029p00102340amborella_trichopodaERN0946847.277234.4059saccharum_spontaneumSspon.01G0019810-1T-mRNA-1:cds34.260124.9327
AMTR_s00029p00102340amborella_trichopodaERN0946824.628719.5545saccharum_spontaneumSspon.01G0019810-1P-mRNA-1:cds39.484131.3492
AMTR_s00029p00102340amborella_trichopodaERN0946847.277234.4059saccharum_spontaneumSspon.01G0019810-3C-mRNA-1:cds34.321724.9775
AMTR_s00029p00102340amborella_trichopodaERN0946845.792131.9307triticum_dicoccoidesTRIDC1AG024420.934.450724.0223
AMTR_s00029p00102340amborella_trichopodaERN0946845.792132.302triticum_dicoccoidesTRIDC1BG029570.234.644224.4382
AMTR_s00029p00102340amborella_trichopodaERN0946843.440631.9307brassica_oleraceaBo5g112470.140.206229.5533
AMTR_s00029p00102340amborella_trichopodaERN0946845.29733.2921oryza_indicaBGIOSGA031663-PA33.951824.9536
AMTR_s00029p00102340amborella_trichopodaERN0946815.841610.396ciona_savignyiENSCSAVP0000001483419.248112.6316
AMTR_s00029p00102340amborella_trichopodaERN0946849.257438.6139dioscorea_rotundataDRNTG_25238.135.409327.758
AMTR_s00029p00102340amborella_trichopodaERN0946845.420832.9208leersia_perrieriLPERR10G10230.134.395524.9297
AMTR_s00029p00102340amborella_trichopodaERN0946847.648536.1386olea_europaeaOE9A080131C138.384829.1127
AMTR_s00029p00102340amborella_trichopodaERN0946847.029737.8713actinidia_chinensisPSR9098246.971637.8245
AMTR_s00029p00102340amborella_trichopodaERN0946855.693141.8317prunus_aviumPav_sc0000410.1_g290.1.mk:mrna45.546634.2105
AMTR_s00029p00102340amborella_trichopodaERN0946853.465340.9653quercus_subercds-POF22764.141.064631.4639
AMTR_s00029p00102340amborella_trichopodaERN0946812.99510.8911nicotiana_attenuataOIT0557427.631623.1579
AMTR_s00029p00102340amborella_trichopodaERN0946837.623826.1139nicotiana_attenuataOIT0557544.250430.7132
AMTR_s00029p00102340amborella_trichopodaERN0946849.257437.995citrus_clementinaESR5072839.211830.2463
AMTR_s00029p00102340amborella_trichopodaERN0946843.440632.1782brassica_rapa_ro18A05p039030.1_BraROA.140.62530.0926
AMTR_s00029p00102340amborella_trichopodaERN0946843.688135.1485daucus_carotaKZN0576241.973833.7693
AMTR_s00029p00102340amborella_trichopodaERN0946845.792132.302aegilops_tauschiiAET1Gv20412800.239.319927.7365
AMTR_s00029p00102340amborella_trichopodaERN0946815.594112.6238pistacia_veracds-EVM0013088.169.613356.3536
AMTR_s00029p00102340amborella_trichopodaERN0946819.306914.8515pistacia_veracds-EVM0009177.146.706635.9281
AMTR_s00029p00102340amborella_trichopodaERN0946822.40117.698pistacia_veracds-EVM0015749.150.700340.056
AMTR_s00029p00102340amborella_trichopodaERN0946834.034725.6188pistacia_veracds-EVM0010484.140.801230.7122
AMTR_s00029p00102340amborella_trichopodaERN0946831.064423.6386pistacia_veracds-EVM0028587.153.862740.9871
AMTR_s00029p00102340amborella_trichopodaERN0946838.737627.104digitaria_exilisDexi9B01G0019440.1:cds38.785627.1375
AMTR_s00029p00102340amborella_trichopodaERN0946843.069330.3218digitaria_exilisDexi9A01G0020140.1:cds45.253631.8596
AMTR_s00029p00102340amborella_trichopodaERN0946845.420833.4158oryza_sativaOs10t0485000-0134.044525.0464
AMTR_s00029p00102340amborella_trichopodaERN0946841.955431.6832panicum_halliiPUZ3855738.391828.9921
AMTR_s00029p00102340amborella_trichopodaERN094681.608910.742574quercus_lobataQL03p043450:mrna4.797052.21402
AMTR_s00029p00102340amborella_trichopodaERN0946853.712941.3366quercus_lobataQL03p043467:mrna56.880743.7746
AMTR_s00029p00102340amborella_trichopodaERN0946847.772334.7772eragrostis_curvulaTVU3031536.142326.3109
AMTR_s00029p00102340amborella_trichopodaERN0946847.40134.6535eragrostis_curvulaTVU0067635.827926.1927
AMTR_s00029p00102340amborella_trichopodaERN0946842.69833.0446camelina_sativaCsa19g027550.141.022631.7479
AMTR_s00029p00102340amborella_trichopodaERN0946842.450533.1683camelina_sativaCsa01g022860.140.784831.8668
AMTR_s00029p00102340amborella_trichopodaERN0946843.069333.4158camelina_sativaCsa15g027880.141.379332.1046
AMTR_s00029p00102340amborella_trichopodaERN0946833.787126.7327selaginella_moellendorffiiEFJ2070635.0927.7635
AMTR_s00029p00102340amborella_trichopodaERN0946833.539626.9802selaginella_moellendorffiiEFJ3271934.13127.4559
AMTR_s00029p00102340amborella_trichopodaERN0946855.445543.0693vitis_viniferaVitvi01g01413_P00141.025631.8681
AMTR_s00029p00102340amborella_trichopodaERN0946839.975231.0644eutrema_salsugineumESQ4790442.895133.3333
AMTR_s00029p00102340amborella_trichopodaERN0946847.89634.901echinochloa_crusgalliscaffold165.61.cds35.310225.7299
AMTR_s00029p00102340amborella_trichopodaERN0946847.89634.5297echinochloa_crusgalliscaffold112.233.cds35.27825.433
AMTR_s00029p00102340amborella_trichopodaERN0946847.524834.5297echinochloa_crusgalliscaffold27.744.cds35.164825.5494
AMTR_s00029p00102340amborella_trichopodaERN0946847.40138.1188corchorus_capsularisOMO6072442.745534.375
AMTR_s00029p00102340amborella_trichopodaERN0946847.153535.6436fraxinus_excelsiorFRAEX38873_v2_000347410.1.cds38.3328.9738
AMTR_s00029p00102340amborella_trichopodaERN0946846.905935.1485fraxinus_excelsiorFRAEX38873_v2_000037140.2.cds38.71329.0092
AMTR_s00029p00102340amborella_trichopodaERN0946845.668336.0149citrullus_lanatusCla97C09G163800.143.61734.3972
AMTR_s00029p00102340amborella_trichopodaERN0946845.420833.4158oryza_nivaraONIVA10G15140.325.171518.5185

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression