Description

Ensembl ID AMTR_s00025p00149970 Gene ID Accession -
Symbol Alias - Full Name DNA ligase IV
Status Confidence Length 28573 bases Strand Minus strand
Position AmTr_v1.0_scaffold00025 : 2222704 - 2251276 RNA binding domain RNA_ligase
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN12455 RNA_ligase PF09414 1.1e-06 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN12455 3363 1120aa ERN12455

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00025p00149970amborella_trichopodaERN1982629.457416.2791amborella_trichopodaERN124553.392861.875
AMTR_s00025p00149970amborella_trichopodaERN1982548.832.8amborella_trichopodaERN124555.446433.66071
AMTR_s00025p00149970amborella_trichopodaERN0050136.206920.4023amborella_trichopodaERN1245522.512.6786
AMTR_s00025p00149970amborella_trichopodaERN0563017.01558.98042amborella_trichopodaERN1245522.511.875

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00025p00149970amborella_trichopodaERN1245527.321415chondrus_crispusCDF3375228.28115.5268
AMTR_s00025p00149970amborella_trichopodaERN1245569.910755.8929papaver_somniferumRZC7074263.503750.7705
AMTR_s00025p00149970amborella_trichopodaERN1245569.910756.875papaver_somniferumRZC5674461.848350.316
AMTR_s00025p00149970amborella_trichopodaERN1245560.267944.7321marchantia_polymorphaPTQ5008657.15542.4217
AMTR_s00025p00149970amborella_trichopodaERN1245567.678654.4643cannabis_sativa_femalecds.evm.model.08.123061.877649.7959
AMTR_s00025p00149970amborella_trichopodaERN1245557.546.3393ficus_caricaFCD_00032459-RA:cds63.075450.8325
AMTR_s00025p00149970amborella_trichopodaERN1245565.892954.0179ficus_caricaFCD_00032471-RA:cds69.295856.8075
AMTR_s00025p00149970amborella_trichopodaERN1245566.785753.125beta_vulgarisKMT1457862.857150
AMTR_s00025p00149970amborella_trichopodaERN1245568.7556.0714theobroma_cacaoEOY3204864.435252.5523
AMTR_s00025p00149970amborella_trichopodaERN1245532.589321.7857chlamydomonas_reinhardtiiPNW7736716.411910.9712
AMTR_s00025p00149970amborella_trichopodaERN1245530.446416.4286chlamydomonas_reinhardtiiPNW8218811.78716.36018
AMTR_s00025p00149970amborella_trichopodaERN1245542.142931.3393cucumis_meloMELO3C003972.2.153.942940.1143
AMTR_s00025p00149970amborella_trichopodaERN1245569.285754.375arabidopsis_thalianaAT5G57160.163.658749.959
AMTR_s00025p00149970amborella_trichopodaERN1245569.107156.3393populus_trichocarpaPotri.018G141900.1.v4.158.680847.8393
AMTR_s00025p00149970amborella_trichopodaERN1245567.589354.2857cucumis_sativusKGN6117862.355950.0824
AMTR_s00025p00149970amborella_trichopodaERN1245568.839353.75brassica_junceacds.BjuA10g12680S63.352549.4659
AMTR_s00025p00149970amborella_trichopodaERN1245567.946453.5714brassica_junceacds.BjuB02g30290S63.575650.1253
AMTR_s00025p00149970amborella_trichopodaERN1245569.107153.9286brassica_napusCDY3827164.125950.0414
AMTR_s00025p00149970amborella_trichopodaERN1245513.83938.03571brassica_napusCDY0276231.440218.2556
AMTR_s00025p00149970amborella_trichopodaERN1245568.214353.6607brassica_napusCDY5273764.418250.6745
AMTR_s00025p00149970amborella_trichopodaERN1245569.464356.7857prunus_persicaONI2721966.89654.6862
AMTR_s00025p00149970amborella_trichopodaERN1245564.732152.7679cajanus_cajanC.cajan_32229.t66.63654.3199
AMTR_s00025p00149970amborella_trichopodaERN1245526.339323.0357malus_domestica_goldenmRNA:MD16G021190086.005875.2187
AMTR_s00025p00149970amborella_trichopodaERN1245541.87532.5malus_domestica_goldenmRNA:MD16G021170057.05644.2822
AMTR_s00025p00149970amborella_trichopodaERN1245567.053654.1071glycine_maxKRH1233062.066150.0826
AMTR_s00025p00149970amborella_trichopodaERN1245533.482124.6429glycine_maxKRH3733751.51137.9121
AMTR_s00025p00149970amborella_trichopodaERN1245569.464356.6964prunus_dulcisVVA2825964.725552.8286
AMTR_s00025p00149970amborella_trichopodaERN1245559.285749.6429medicago_truncatulaAES6532775.198262.9672
AMTR_s00025p00149970amborella_trichopodaERN1245562.678649.7321lupinus_angustifoliusOIV9740662.289349.4232
AMTR_s00025p00149970amborella_trichopodaERN1245561.607145.5357physcomitrium_patensPp3c14_5920V3.253.240739.3519
AMTR_s00025p00149970amborella_trichopodaERN1245567.410753.8393phaseolus_vulgarisESW1076464.419851.4505
AMTR_s00025p00149970amborella_trichopodaERN1245525.267922.0536pisum_sativumPsat1g144440.1.cds80.1769.9717
AMTR_s00025p00149970amborella_trichopodaERN1245537.589328.5714pisum_sativumPsat1g144400.1.cds54.113141.1311
AMTR_s00025p00149970amborella_trichopodaERN1245511.69648.83929pisum_sativumPsat5g051520.1.cds170.810853.5135
AMTR_s00025p00149970amborella_trichopodaERN1245553.303642.6786vigna_angularisKOM398646048.0402
AMTR_s00025p00149970amborella_trichopodaERN1245524.196421.875vigna_unguiculataVigun09g030100.1.v1.282.121274.2424
AMTR_s00025p00149970amborella_trichopodaERN1245541.87531.6071vigna_unguiculataVigun09g030200.1.v1.256.642542.7536
AMTR_s00025p00149970amborella_trichopodaERN1245537.053627.6786manihot_esculentaOAY3200555.039841.1141
AMTR_s00025p00149970amborella_trichopodaERN1245528.482125.625manihot_esculentaOAY3200677.053169.3237
AMTR_s00025p00149970amborella_trichopodaERN1245566.517951.6964solanum_lycopersicumSolyc07g018000.3.163.458349.3186
AMTR_s00025p00149970amborella_trichopodaERN124558.928576.96429capsicum_annuumPHT6453566.666752
AMTR_s00025p00149970amborella_trichopodaERN1245539.464329.7321capsicum_annuumPHT6453659.249344.6381
AMTR_s00025p00149970amborella_trichopodaERN1245560.089349.375vigna_radiataVradi05g02670.160.90550.0452
AMTR_s00025p00149970amborella_trichopodaERN1245568.035752.5sesamum_indicumSIN_1003515.t57.946844.7148
AMTR_s00025p00149970amborella_trichopodaERN1245561.964349.0179lactuca_sativacds-PLY96173.165.969652.1863
AMTR_s00025p00149970amborella_trichopodaERN1245567.678654.5536helianthus_annuusmRNA:HanXRQr2_Chr05g020171166.43353.5495
AMTR_s00025p00149970amborella_trichopodaERN1245567.946452.5893avena_sativa_ot3098cds.AVESA.00001b.r3.2Ag0002011.1359.592846.1237
AMTR_s00025p00149970amborella_trichopodaERN1245568.12552.7679avena_sativa_ot3098cds.AVESA.00001b.r3.2Dg0001934.1160.078746.5354
AMTR_s00025p00149970amborella_trichopodaERN1245568.303652.7679avena_sativa_ot3098cds.AVESA.00001b.r3.2Cg0002695.961.993547.893
AMTR_s00025p00149970amborella_trichopodaERN1245561.428648.75oryza_longistaminataKN540031.1_FGP00356.625544.9383
AMTR_s00025p00149970amborella_trichopodaERN1245568.482152.9464avena_sativa_sangAVESA.00010b.r2.2CG0317030.1.CDS62.155648.0551
AMTR_s00025p00149970amborella_trichopodaERN1245568.12552.7679avena_sativa_sangAVESA.00010b.r2.2AG0238190.1.CDS61.831447.893
AMTR_s00025p00149970amborella_trichopodaERN1245568.035752.6786avena_sativa_sangAVESA.00010b.r2.2DG0365250.1.CDS61.750447.812
AMTR_s00025p00149970amborella_trichopodaERN1245566.607151.0714oryza_rufipogonORUFI04G26210.158.099744.5483
AMTR_s00025p00149970amborella_trichopodaERN1245540.089329.1071oryza_brachyanthaOB04G31400.149.178535.7065
AMTR_s00025p00149970amborella_trichopodaERN1245567.678653.2143oryza_glaberrimaORGLA04G0210200.163.114149.6253
AMTR_s00025p00149970amborella_trichopodaERN1245566.785751.5179oryza_punctataOPUNC04G21990.258.437545.0781
AMTR_s00025p00149970amborella_trichopodaERN1245567.053652.6786setaria_italicaKQK9880763.375549.789
AMTR_s00025p00149970amborella_trichopodaERN1245527.410717.9464setaria_viridisTKW0640445.752629.9553
AMTR_s00025p00149970amborella_trichopodaERN1245569.553654.5536sorghum_bicolorOQU8226460.811947.6971
AMTR_s00025p00149970amborella_trichopodaERN1245569.017954.1071triticum_turgidumTRITD2Av1G250540.762.540549.0291
AMTR_s00025p00149970amborella_trichopodaERN1245567.946453.3036triticum_turgidumTRITD2Bv1G212650.164.821150.8518
AMTR_s00025p00149970amborella_trichopodaERN1245568.571454.0179secale_cerealeSECCE2Rv1G0119430.162.591749.3073
AMTR_s00025p00149970amborella_trichopodaERN1245559.732146.7857triticum_aestivumTraesCS2B02G453300.163.532849.7626
AMTR_s00025p00149970amborella_trichopodaERN1245569.017953.9286triticum_aestivumTraesCS2D02G429800.162.591148.9069
AMTR_s00025p00149970amborella_trichopodaERN1245569.017954.1071triticum_aestivumTraesCS2A02G431800.162.641849.1086
AMTR_s00025p00149970amborella_trichopodaERN1245568.7553.0357zea_maysZm00001eb071490_P00163.741749.1722
AMTR_s00025p00149970amborella_trichopodaERN1245518.839310.8929caenorhabditis_elegansC07H6.1.128.47516.4642
AMTR_s00025p00149970amborella_trichopodaERN1245526.607115.625drosophila_melanogasterFBpp007367832.461919.0632
AMTR_s00025p00149970amborella_trichopodaERN1245532.767918.4821homo_sapiensENSP0000040203040.285422.7223
AMTR_s00025p00149970amborella_trichopodaERN1245526.339315.5357saccharomyces_cerevisiaeYOR005C31.2518.4322
AMTR_s00025p00149970amborella_trichopodaERN1245562.767947.5chenopodium_quinoaAUR62000175-RA:cds58.681144.4073
AMTR_s00025p00149970amborella_trichopodaERN1245512.58937.67857chara_brauniiGBG9011152.80932.2097
AMTR_s00025p00149970amborella_trichopodaERN1245568.7554.4643arabis_alpinaKFK2727163.847450.5804
AMTR_s00025p00149970amborella_trichopodaERN1245569.196454.5536brachypodium_distachyonKQJ8444662.702349.4337
AMTR_s00025p00149970amborella_trichopodaERN1245566.428651.6071oryza_glumipatulaOGLUM04G24450.257.186844.4274
AMTR_s00025p00149970amborella_trichopodaERN1245560.892948.0357oryza_meridionalisOMERI04G20250.158.042645.7872
AMTR_s00025p00149970amborella_trichopodaERN1245567.142952.4107ipomoea_trilobaitb12g00100.t163.246449.3692
AMTR_s00025p00149970amborella_trichopodaERN1245559.910750.4464kalanchoe_fedtschenkoiKaladp0001s0308.1.v1.162.476752.6071
AMTR_s00025p00149970amborella_trichopodaERN1245527.589315.625galdieria_sulphurariaEME2868533.844519.1676
AMTR_s00025p00149970amborella_trichopodaERN1245536.160728.125eucalyptus_grandisKCW7864652.665840.9623
AMTR_s00025p00149970amborella_trichopodaERN1245564.017952.2321cynara_cardunculusKVI1181765.961453.8178
AMTR_s00025p00149970amborella_trichopodaERN1245567.053654.1071trifolium_pratenseTp57577_TGAC_v2_mRNA783445.736936.9062
AMTR_s00025p00149970amborella_trichopodaERN1245568.12554.9107gossypium_raimondiiKJB8335763.005850.7845
AMTR_s00025p00149970amborella_trichopodaERN1245569.642954.2857arabidopsis_lyratafgenesh2_kg.8__1628__AT5G57160.163.882149.7952
AMTR_s00025p00149970amborella_trichopodaERN1245568.928654.1071hordeum_vulgareHORVU.MOREX.r3.2HG0192610.162.459549.0291
AMTR_s00025p00149970amborella_trichopodaERN1245566.517951.6964oryza_barthiiOBART04G24540.159.457346.2091
AMTR_s00025p00149970amborella_trichopodaERN1245561.607150.0893asparagus_officinalisONK7887567.913455.2165
AMTR_s00025p00149970amborella_trichopodaERN1245570.178656.4286musa_acuminataMa01_p18780.468.051954.7186
AMTR_s00025p00149970amborella_trichopodaERN1245568.660753.3036arabidopsis_hallerig24150.t162.520348.5366
AMTR_s00025p00149970amborella_trichopodaERN1245568.839353.4821eragrostis_tefEt_7A_052117.CDS63.613949.4224
AMTR_s00025p00149970amborella_trichopodaERN1245569.196453.6607eragrostis_tefEt_7B_054769.CDS63.943949.5875
AMTR_s00025p00149970amborella_trichopodaERN1245566.87555.2679corymbia_citriodoracds-KAF8033684.164.513453.3161
AMTR_s00025p00149970amborella_trichopodaERN1245569.017955.9821rosa_chinensisPRQ3714465.397653.0457
AMTR_s00025p00149970amborella_trichopodaERN1245528.482119.1964saccharum_spontaneumSspon.05G0031190-2D-mRNA-1:cds45.441630.6268
AMTR_s00025p00149970amborella_trichopodaERN1245513.759.28571saccharum_spontaneumSspon.05G0031180-1C-mRNA-1:cds51.677934.8993
AMTR_s00025p00149970amborella_trichopodaERN1245548.928636.9643triticum_dicoccoidesTRIDC2BG066100.258.798344.4206
AMTR_s00025p00149970amborella_trichopodaERN1245532.142922.4107triticum_dicoccoidesTRIDC2AG062230.1247.058832.8105
AMTR_s00025p00149970amborella_trichopodaERN1245568.303653.75brassica_oleraceaBo9g130900.163.014849.5881
AMTR_s00025p00149970amborella_trichopodaERN1245570.089354.7321oryza_indicaBGIOSGA014394-PA59.379746.3691
AMTR_s00025p00149970amborella_trichopodaERN1245530.267918.5714ciona_savignyiENSCSAVP0000001754444.02627.013
AMTR_s00025p00149970amborella_trichopodaERN1245568.303655.2679dioscorea_rotundataDRNTG_05142.167.223254.3937
AMTR_s00025p00149970amborella_trichopodaERN1245569.910753.8393leersia_perrieriLPERR04G20120.158.563945.101
AMTR_s00025p00149970amborella_trichopodaERN1245567.857153.6607olea_europaeaOE9A106201C160.221947.6228
AMTR_s00025p00149970amborella_trichopodaERN1245565.267952.2321actinidia_chinensisPSR8520765.326252.2788
AMTR_s00025p00149970amborella_trichopodaERN1245563.214351.4286prunus_aviumPav_sc0000624.1_g1370.1.mk:mrna64.716652.6508
AMTR_s00025p00149970amborella_trichopodaERN1245567.554.1964quercus_subercds-POF07460.165.228652.3727
AMTR_s00025p00149970amborella_trichopodaERN1245568.660755.0893citrus_clementinaESR6648066.350353.2355
AMTR_s00025p00149970amborella_trichopodaERN1245568.660753.5714brassica_rapa_ro18A10p020530.1_BraROA.163.764549.7512
AMTR_s00025p00149970amborella_trichopodaERN1245551.339343.125daucus_carotaKZM9248874.481962.5648
AMTR_s00025p00149970amborella_trichopodaERN1245565.714354.9107nymphaea_colorataNC11G0016340.1:cds61.952951.7677
AMTR_s00025p00149970amborella_trichopodaERN1245541.964326.25ostreococcus_lucimarinusABO9860247.283729.5775
AMTR_s00025p00149970amborella_trichopodaERN1245567.321453.4821coffea_canephoraCDP1578465.112351.7271
AMTR_s00025p00149970amborella_trichopodaERN1245569.196454.1071aegilops_tauschiiAET2Gv20953400.1061.216447.8673
AMTR_s00025p00149970amborella_trichopodaERN1245568.482156.6071pistacia_veracds-EVM0014835.165.724154.3273
AMTR_s00025p00149970amborella_trichopodaERN124557.410716.33929pistacia_veracds-EVM0017778.167.479757.7236
AMTR_s00025p00149970amborella_trichopodaERN1245565.535750.625digitaria_exilisDexi7A01G0018150.1:cds61.47447.4874
AMTR_s00025p00149970amborella_trichopodaERN1245565.267950.625digitaria_exilisDexi7B01G0018800.1:cds61.222847.4874
AMTR_s00025p00149970amborella_trichopodaERN1245569.821454.1964panicum_halliiPUZ4878464.098449.7541
AMTR_s00025p00149970amborella_trichopodaERN1245567.142952.2321eragrostis_curvulaTVU1584459.82546.5394
AMTR_s00025p00149970amborella_trichopodaERN1245569.107153.6607camelina_sativaCsa11g090720.157.206244.4198
AMTR_s00025p00149970amborella_trichopodaERN1245569.196454.2857camelina_sativaCsa18g030130.163.838650.0824
AMTR_s00025p00149970amborella_trichopodaERN1245569.285754.375camelina_sativaCsa02g061610.161.636248.3717
AMTR_s00025p00149970amborella_trichopodaERN1245556.517941.9643selaginella_moellendorffiiEFJ2495154.056440.1366
AMTR_s00025p00149970amborella_trichopodaERN1245556.87541.6071selaginella_moellendorffiiEFJ1540054.351539.7611
AMTR_s00025p00149970amborella_trichopodaERN1245544.107134.1071vitis_viniferaVitvi11g01148_P00159.232645.8034
AMTR_s00025p00149970amborella_trichopodaERN1245568.571453.9286eutrema_salsugineumESQ4268962.950849.5082
AMTR_s00025p00149970amborella_trichopodaERN1245569.285754.4643echinochloa_crusgalliscaffold14.352.cds63.450549.8773
AMTR_s00025p00149970amborella_trichopodaERN1245569.37554.5536echinochloa_crusgalliscaffold49.82.cds63.584350
AMTR_s00025p00149970amborella_trichopodaERN1245565.089350.0893echinochloa_crusgalliscaffold94.412.cds38.8829.92
AMTR_s00025p00149970amborella_trichopodaERN1245568.303655.3571corchorus_capsularisOMO7709363.538251.495
AMTR_s00025p00149970amborella_trichopodaERN1245527.946421.9643fraxinus_excelsiorFRAEX38873_v2_000298360.1.cds76.528160.1467
AMTR_s00025p00149970amborella_trichopodaERN1245549.107133.4821fraxinus_excelsiorFRAEX38873_v2_000288150.1.cds45.795231.224
AMTR_s00025p00149970amborella_trichopodaERN1245568.035755citrullus_lanatusCla97C11G217720.161.900950.0406
AMTR_s00025p00149970amborella_trichopodaERN1245565.446450.7143oryza_nivaraONIVA04G23690.556.865844.0652

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression