Description

Ensembl ID AMTR_s00020p00246930 Gene ID Accession -
Symbol Alias - Full Name hypothetical protein
Status Confidence Length 42258 bases Strand Minus strand
Position AmTr_v1.0_scaffold00020 : 6051818 - 6094075 RNA binding domain RNA_pol_Rpb2_3 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6 , RNA_pol_Rpb2_4 , RNA_pol_Rpb2_5
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN11930 RNA_pol_Rpb2_3 PF04565 3.6e-20 1
ERN11930 RNA_pol_Rpb2_2 PF04561 7.8e-07 2
ERN11930 RNA_pol_Rpb2_6 PF00562 1.1e-34 3
ERN11930 RNA_pol_Rpb2_4 PF04566 8e-23 4
ERN11930 RNA_pol_Rpb2_5 PF04567 4.2e-09 5

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN11930 1827 608aa ERN11930

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00020p00246930amborella_trichopodaERN1193214.4866.07477amborella_trichopodaERN119305.098682.13816
AMTR_s00020p00246930amborella_trichopodaERN2050229.758719.3029amborella_trichopodaERN1193018.256611.8421
AMTR_s00020p00246930amborella_trichopodaERN119276.451614.69208amborella_trichopodaERN119303.618422.63158
AMTR_s00020p00246930amborella_trichopodaERN059603.52amborella_trichopodaERN119301.151320.657895
AMTR_s00020p00246930amborella_trichopodaERN0055917.25669.73451amborella_trichopodaERN1193012.82897.23684
AMTR_s00020p00246930amborella_trichopodaERN2050526.386617.0588amborella_trichopodaERN1193051.644733.3882
AMTR_s00020p00246930amborella_trichopodaERM983652.8491.4245amborella_trichopodaERN119301.644740.822368
AMTR_s00020p00246930amborella_trichopodaERM9836729.549915.0685amborella_trichopodaERN1193024.835512.6645
AMTR_s00020p00246930amborella_trichopodaERN2050320.35413.7168amborella_trichopodaERN119307.565795.09868
AMTR_s00020p00246930amborella_trichopodaERN205048.379895.58659amborella_trichopodaERN119302.467111.64474
AMTR_s00020p00246930amborella_trichopodaERN0473417.972412.596amborella_trichopodaERN1193019.243413.4868
AMTR_s00020p00246930amborella_trichopodaERM9436921.867313.6773amborella_trichopodaERN1193043.914527.4671

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00020p00246930amborella_trichopodaERN1193070.723755.9211chondrus_crispusCDF3876036.720829.035
AMTR_s00020p00246930amborella_trichopodaERN1193082.565869.4079papaver_somniferumRZC8343044.307137.2463
AMTR_s00020p00246930amborella_trichopodaERN1193079.769767.2697papaver_somniferumRZC5725642.581235.9087
AMTR_s00020p00246930amborella_trichopodaERN1193078.12565.7895papaver_somniferumRZC7904042.908836.1337
AMTR_s00020p00246930amborella_trichopodaERN1193059.046150.4934papaver_somniferumRZC7263651.654744.1727
AMTR_s00020p00246930amborella_trichopodaERN1193081.085566.9408marchantia_polymorphaPTQ3254141.324434.1157
AMTR_s00020p00246930amborella_trichopodaERN1193080.921169.4079cannabis_sativa_femalecds.evm.model.05.141232.2227.6359
AMTR_s00020p00246930amborella_trichopodaERN1193061.842155.0987cannabis_sativa_femalecds.evm.model.05.141151.436445.8276
AMTR_s00020p00246930amborella_trichopodaERN1193076.480366.4474ficus_caricaFCD_00028038-RA:cds59.010251.269
AMTR_s00020p00246930amborella_trichopodaERN1193026.315819.2434ficus_caricaFCD_00028040-RA:cds40.712529.771
AMTR_s00020p00246930amborella_trichopodaERN1193079.440866.4474ficus_caricaFCD_00027434-RA:cds40.793934.1216
AMTR_s00020p00246930amborella_trichopodaERN1193079.934267.2697beta_vulgarisKMS9952442.297635.5962
AMTR_s00020p00246930amborella_trichopodaERN1193013.486812.1711theobroma_cacaoEOX9992692.134883.1461
AMTR_s00020p00246930amborella_trichopodaERN1193032.401327.7961theobroma_cacaoEOY0927934.142129.2894
AMTR_s00020p00246930amborella_trichopodaERN1193012.171111.1842theobroma_cacaoEOX9992769.811364.1509
AMTR_s00020p00246930amborella_trichopodaERN1193082.894771.3816theobroma_cacaoEOY1960943.523337.4784
AMTR_s00020p00246930amborella_trichopodaERN1193072.697457.5658chlamydomonas_reinhardtiiPNW7623036.052228.5481
AMTR_s00020p00246930amborella_trichopodaERN1193081.907970.3947cucumis_meloMELO3C024455.2.143.005236.9603
AMTR_s00020p00246930amborella_trichopodaERN1193080.921166.7763arabidopsis_thalianaAT5G45140.242.377334.9699
AMTR_s00020p00246930amborella_trichopodaERN1193081.743470.7237populus_trichocarpaPotri.015G003000.5.v4.143.179837.3588
AMTR_s00020p00246930amborella_trichopodaERN1193077.138262.0066brassica_junceacds.BjuB05g44910S39.678531.8951
AMTR_s00020p00246930amborella_trichopodaERN1193075.493460.8553brassica_junceacds.BjuA02g13170S41.314133.3033
AMTR_s00020p00246930amborella_trichopodaERN1193079.934265.7895brassica_napusCDX8258041.432234.1006
AMTR_s00020p00246930amborella_trichopodaERN1193063.322450.3289brassica_napusCDY2639650.925940.4762
AMTR_s00020p00246930amborella_trichopodaERN119307.565796.08553brassica_napusCDY2639712.534110.0817
AMTR_s00020p00246930amborella_trichopodaERN1193076.644762.3355brassica_napusCDY3669739.965732.5043
AMTR_s00020p00246930amborella_trichopodaERN1193080.098765.625brassica_napusCDY3941341.766734.2196
AMTR_s00020p00246930amborella_trichopodaERN1193080.427667.4342prunus_persicaONI2098442.082635.284
AMTR_s00020p00246930amborella_trichopodaERN1193073.026363.3224cajanus_cajanC.cajan_27455.t50.742944
AMTR_s00020p00246930amborella_trichopodaERN1193078.782965.7895malus_domestica_goldenmRNA:MD14G002640041.151234.3643
AMTR_s00020p00246930amborella_trichopodaERN1193080.592168.75glycine_maxKRH4899742.060135.8798
AMTR_s00020p00246930amborella_trichopodaERN1193079.440867.7632glycine_maxKRH7422041.388235.3042
AMTR_s00020p00246930amborella_trichopodaERN1193080.427667.4342prunus_dulcisVVA2196042.082635.284
AMTR_s00020p00246930amborella_trichopodaERN1193080.592167.5987medicago_truncatulaKEH1852124.475520.5295
AMTR_s00020p00246930amborella_trichopodaERN1193081.085568.4211lupinus_angustifoliusOIV9964139.282933.1474
AMTR_s00020p00246930amborella_trichopodaERN1193080.756667.4342physcomitrium_patensPp3c18_11070V3.342.182135.2234
AMTR_s00020p00246930amborella_trichopodaERN1193081.2568.75phaseolus_vulgarisESW2495842.549536.0034
AMTR_s00020p00246930amborella_trichopodaERN119300.3289470.164474pisum_sativumPsat7g198080.1.cds1.39860.699301
AMTR_s00020p00246930amborella_trichopodaERN119307565.2961vigna_angularisKOM5417449.297342.9189
AMTR_s00020p00246930amborella_trichopodaERN1193080.756668.4211vigna_unguiculataVigun04g006000.1.v1.242.364135.893
AMTR_s00020p00246930amborella_trichopodaERN1193082.730370.5592manihot_esculentaOAY5334443.663237.2396
AMTR_s00020p00246930amborella_trichopodaERN1193078.782965.9539solanum_lycopersicumSolyc10g078880.2.141.688434.8999
AMTR_s00020p00246930amborella_trichopodaERN1193081.2568.4211solanum_lycopersicumSolyc10g078860.2.142.844836.0798
AMTR_s00020p00246930amborella_trichopodaERN1193077.960566.1184vigna_radiataVradi01g03480.145.797138.8406
AMTR_s00020p00246930amborella_trichopodaERN1193070.888262.1711sesamum_indicumSIN_1003246.t56.63649.6715
AMTR_s00020p00246930amborella_trichopodaERN119302.138161.64474sesamum_indicumSIN_1003247.t9.701497.46269
AMTR_s00020p00246930amborella_trichopodaERN119304.769742.30263sesamum_indicumSIN_1003245.t16.7638.09249
AMTR_s00020p00246930amborella_trichopodaERN1193080.427666.1184lactuca_sativacds-PLY90130.142.521734.9565
AMTR_s00020p00246930amborella_trichopodaERN1193080.427666.9408helianthus_annuusmRNA:HanXRQr2_Chr04g018129142.782235.608
AMTR_s00020p00246930amborella_trichopodaERN1193077.138264.3092helianthus_annuusmRNA:HanXRQr2_Chr15g069366140.361433.6489
AMTR_s00020p00246930amborella_trichopodaERN1193081.2568.2566solanum_tuberosumPGSC0003DMT40002978042.844835.9931
AMTR_s00020p00246930amborella_trichopodaERN1193079.111865.7895solanum_tuberosumPGSC0003DMT40002978241.789734.7524
AMTR_s00020p00246930amborella_trichopodaERN1193071.87560.1974ananas_comosusAco020883.1.mrna138.570232.3036
AMTR_s00020p00246930amborella_trichopodaERN1193069.407950.3289caenorhabditis_elegansF09F7.3.136.568526.5165
AMTR_s00020p00246930amborella_trichopodaERN1193069.572451.1513drosophila_melanogasterFBpp008708537.203227.3527
AMTR_s00020p00246930amborella_trichopodaERN1193071.87556.5789homo_sapiensENSP0000022834738.570230.3619
AMTR_s00020p00246930amborella_trichopodaERN1193070.230354.6053saccharomyces_cerevisiaeYOR207C37.162828.8947
AMTR_s00020p00246930amborella_trichopodaERN1193061.842151.1513chenopodium_quinoaAUR62036901-RA:cds40.736733.6945
AMTR_s00020p00246930amborella_trichopodaERN1193062.993451.9737chenopodium_quinoaAUR62013825-RA:cds38.223631.5369
AMTR_s00020p00246930amborella_trichopodaERN1193073.848761.5132chara_brauniiGBG8896347.867839.8721
AMTR_s00020p00246930amborella_trichopodaERN1193079.934266.6118arabis_alpinaKFK4186942.297635.248
AMTR_s00020p00246930amborella_trichopodaERN1193036.184233.8816corylus_avellanaCav01g31690.t167.278362.9969
AMTR_s00020p00246930amborella_trichopodaERN1193012.171110.3618corylus_avellanaCav01g31700.t118.362315.6328
AMTR_s00020p00246930amborella_trichopodaERN1193081.414569.2434ipomoea_trilobaitb07g24390.t243.156136.7044
AMTR_s00020p00246930amborella_trichopodaERN119302.960531.97368kalanchoe_fedtschenkoiKaladp0051s0083.1.v1.18.411215.60748
AMTR_s00020p00246930amborella_trichopodaERN1193069.078952.7961galdieria_sulphurariaEME2784136.269427.7202
AMTR_s00020p00246930amborella_trichopodaERN119302.138161.48026eucalyptus_grandisKCW884089.701496.71642
AMTR_s00020p00246930amborella_trichopodaERN1193059.539554.1118eucalyptus_grandisKCW8840767.286261.1524
AMTR_s00020p00246930amborella_trichopodaERN1193020.394715.4605eucalyptus_grandisKCW8840630.392223.0392
AMTR_s00020p00246930amborella_trichopodaERN1193067.269747.6974cyanidioschyzon_merolaeCME101CT32.230122.8526
AMTR_s00020p00246930amborella_trichopodaERN1193070.394760.0329cynara_cardunculusKVH9788546.220339.4168
AMTR_s00020p00246930amborella_trichopodaERN1193078.947466.7763trifolium_pratenseTp57577_TGAC_v2_mRNA2735241.41535.0302
AMTR_s00020p00246930amborella_trichopodaERN1193030.263220.5592trifolium_pratenseTp57577_TGAC_v2_mRNA1694633.515522.7687
AMTR_s00020p00246930amborella_trichopodaERN1193079.934266.4474trifolium_pratenseTp57577_TGAC_v2_mRNA3076441.609634.589
AMTR_s00020p00246930amborella_trichopodaERN1193082.730370.7237gossypium_raimondiiKJB7502943.399537.1009
AMTR_s00020p00246930amborella_trichopodaERN1193056.907948.1908gossypium_raimondiiKJB3928135.162629.7764
AMTR_s00020p00246930amborella_trichopodaERN1193080.921167.4342arabidopsis_lyratascaffold_800415.142.231835.1931
AMTR_s00020p00246930amborella_trichopodaERN1193077.631665.7895asparagus_officinalisONK8147550.862143.1034
AMTR_s00020p00246930amborella_trichopodaERN1193080.756670.3947musa_acuminataMa04_p16730.142.621537.1528
AMTR_s00020p00246930amborella_trichopodaERN1193080.263266.7763arabidopsis_hallerig29366.t141.960434.9097
AMTR_s00020p00246930amborella_trichopodaERN1193076.151362.0066rosa_chinensisPRQ2038740.47232.9545
AMTR_s00020p00246930amborella_trichopodaERN1193080.263267.4342rosa_chinensisPRQ5570942.032735.3144
AMTR_s00020p00246930amborella_trichopodaERN1193080.427669.2434juglans_regiacds.Jr05_01600_p148.851242.0579
AMTR_s00020p00246930amborella_trichopodaERN1193082.401370.7237juglans_regiacds.Jr05_01590_p143.115337.0052
AMTR_s00020p00246930amborella_trichopodaERN1193076.644762.3355brassica_oleraceaBo2g125830.139.965732.5043
AMTR_s00020p00246930amborella_trichopodaERN1193079.934265.7895brassica_oleraceaBo7g070050.142.224234.7524
AMTR_s00020p00246930amborella_trichopodaERN1193069.243452.3026ciona_savignyiENSCSAVP0000001361136.800727.7972
AMTR_s00020p00246930amborella_trichopodaERN1193080.263269.5724dioscorea_rotundataDRNTG_29692.141.888436.309
AMTR_s00020p00246930amborella_trichopodaERN1193043.092138.8158olea_europaeaOE9A082099C343.021338.7521
AMTR_s00020p00246930amborella_trichopodaERN1193020.723712.0066olea_europaeaOE9A100986C132.812519.0104
AMTR_s00020p00246930amborella_trichopodaERN1193076.480365.9539olea_europaeaOE9A037122C358.786350.6953
AMTR_s00020p00246930amborella_trichopodaERN1193080.756669.4079actinidia_chinensisPSS0290442.327636.3793
AMTR_s00020p00246930amborella_trichopodaERN119302.960531.97368prunus_aviumPav_sc0006020.1_g010.1.mk:mrna8.372095.5814
AMTR_s00020p00246930amborella_trichopodaERN1193036.184233.0592prunus_aviumPav_sc0008451.1_g010.1.mk:mrna49.107144.8661
AMTR_s00020p00246930amborella_trichopodaERN1193016.118415.625prunus_aviumPav_sc0009059.1_g010.1.mk:mrna89.090986.3636
AMTR_s00020p00246930amborella_trichopodaERN119305.263162.46711prunus_aviumPav_sc0008451.1_g020.1.mk:mrna15.23817.14286
AMTR_s00020p00246930amborella_trichopodaERN1193082.236869.2434quercus_subercds-POE58879.136.416630.6628
AMTR_s00020p00246930amborella_trichopodaERN119300.9868420.657895quercus_subercds-POF03235.18.823535.88235
AMTR_s00020p00246930amborella_trichopodaERN1193080.921168.75nicotiana_attenuataOIT0129942.597436.1905
AMTR_s00020p00246930amborella_trichopodaERN1193082.894771.2171citrus_clementinaESR4562543.864237.6849
AMTR_s00020p00246930amborella_trichopodaERN1193079.934265.625brassica_rapa_ro18A06p055610.1_BraROA.140.601533.3333
AMTR_s00020p00246930amborella_trichopodaERN1193072.203962.3355daucus_carotaKZN0375743.336637.4136
AMTR_s00020p00246930amborella_trichopodaERN1193079.111866.4474daucus_carotaKZM9026442.679735.8474
AMTR_s00020p00246930amborella_trichopodaERN1193076.973764.8026nymphaea_colorataNC2G0036610.1:cds41.269834.7443
AMTR_s00020p00246930amborella_trichopodaERN1193075.657960.0329ostreococcus_lucimarinusABO9430540.139631.8499
AMTR_s00020p00246930amborella_trichopodaERN1193018.256615.4605coffea_canephoraCDO9860924.288820.5689
AMTR_s00020p00246930amborella_trichopodaERN1193065.953956.25coffea_canephoraCDO9860856.320248.0337
AMTR_s00020p00246930amborella_trichopodaERN1193017.763215.9539digitaria_exilisDexi1B01G0019810.1:cds8071.8519
AMTR_s00020p00246930amborella_trichopodaERN119303.1251.80921panicum_halliiPUZ6741511.44586.62651
AMTR_s00020p00246930amborella_trichopodaERN119301.973681.48026quercus_lobataQL05p086414:mrna5.479454.10959
AMTR_s00020p00246930amborella_trichopodaERN1193031.2526.1513quercus_lobataQL05p086844:mrna43.083936.0544
AMTR_s00020p00246930amborella_trichopodaERN1193036.842128.6184quercus_lobataQL05p087351:mrna42.026332.6454
AMTR_s00020p00246930amborella_trichopodaERN1193047.861842.2697quercus_lobataQL05p087326:mrna42.358137.409
AMTR_s00020p00246930amborella_trichopodaERN119302.631581.80921quercus_lobataQL05p087226:mrna6.42574.41767
AMTR_s00020p00246930amborella_trichopodaERN1193045.559240.7895quercus_lobataQL05p086812:mrna44.108339.4904
AMTR_s00020p00246930amborella_trichopodaERN1193079.111865.625camelina_sativaCsa18g008330.139.719232.948
AMTR_s00020p00246930amborella_trichopodaERN1193080.921167.2697camelina_sativaCsa20g074600.139.297132.6677
AMTR_s00020p00246930amborella_trichopodaERN1193081.414567.9276camelina_sativaCsa11g068250.142.525835.4811
AMTR_s00020p00246930amborella_trichopodaERN1193081.578967.2697selaginella_moellendorffiiEFJ0677934.444428.4028
AMTR_s00020p00246930amborella_trichopodaERN1193079.440865.7895selaginella_moellendorffiiEFJ2173634.848528.86
AMTR_s00020p00246930amborella_trichopodaERN1193081.907970.8882vitis_viniferaVitvi13g01384_P00143.042437.2515
AMTR_s00020p00246930amborella_trichopodaERN1193080.592167.2697eutrema_salsugineumESQ3961642.096235.1375
AMTR_s00020p00246930amborella_trichopodaERN1193036.513229.1118corchorus_capsularisOMO6117641.57333.1461
AMTR_s00020p00246930amborella_trichopodaERN1193032.894729.6053corchorus_capsularisOMO6117237.105833.3952
AMTR_s00020p00246930amborella_trichopodaERN1193075.328966.7763fraxinus_excelsiorFRAEX38873_v2_000046680.1.cds49.567143.9394
AMTR_s00020p00246930amborella_trichopodaERN1193081.907970.8882citrullus_lanatusCla97C07G128270.142.203436.5254

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression