Description

Ensembl ID AMTR_s00010p00247540 Gene ID Accession -
Symbol Alias - Full Name hypothetical protein
Status Confidence Length 648 bases Strand Minus strand
Position AmTr_v1.0_scaffold00010 : 6100492 - 6101139 RNA binding domain Ribosomal_L12
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERM94362 Ribosomal_L12 PF00542 1e-22 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERM94362 648 215aa ERM94362

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00010p00247540amborella_trichopodaERN1036789.380584.9557amborella_trichopodaERM9436246.976744.6512
AMTR_s00010p00247540amborella_trichopodaERN1983285.964980.7018amborella_trichopodaERM9436268.372164.186
AMTR_s00010p00247540amborella_trichopodaERN0124659.44741.9355amborella_trichopodaERM943626042.3256
AMTR_s00010p00247540amborella_trichopodaERN1863257.926837.1951amborella_trichopodaERM9436244.18628.3721
AMTR_s00010p00247540amborella_trichopodaERN1957355.61837.6404amborella_trichopodaERM9436246.046531.1628
AMTR_s00010p00247540amborella_trichopodaERM9727854.822337.5635amborella_trichopodaERM9436250.232634.4186

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00010p00247540amborella_trichopodaERM9436274.883761.3953papaver_somniferumRZC8325476.666762.8571
AMTR_s00010p00247540amborella_trichopodaERM9436270.697759.0698papaver_somniferumRZC7920983.060169.3989
AMTR_s00010p00247540amborella_trichopodaERM9436262.325646.9767marchantia_polymorphaPTQ3625958.515344.1048
AMTR_s00010p00247540amborella_trichopodaERM9436276.279162.3256cannabis_sativa_femalecds.evm.model.03.148176.635562.6168
AMTR_s00010p00247540amborella_trichopodaERM9436267.90755.3488ficus_caricaFCD_00034606-RA:cds79.781465.0273
AMTR_s00010p00247540amborella_trichopodaERM9436273.488460.4651ficus_caricaFCD_00021838-RA:cds57.246447.1014
AMTR_s00010p00247540amborella_trichopodaERM9436269.767458.6047beta_vulgarisKMS9773469.124458.0645
AMTR_s00010p00247540amborella_trichopodaERM9436276.744262.3256theobroma_cacaoEOX9687270.512857.265
AMTR_s00010p00247540amborella_trichopodaERM9436275.348863.2558cucumis_meloMELO3C002405.2.175.700963.5514
AMTR_s00010p00247540amborella_trichopodaERM9436266.976754.8837arabidopsis_thalianaAT1G70190.169.230856.7308
AMTR_s00010p00247540amborella_trichopodaERM9436231.627922.7907arabidopsis_thalianaAT2G03130.161.818244.5455
AMTR_s00010p00247540amborella_trichopodaERM9436275.81461.8605populus_trichocarpaPotri.003G074800.1.v4.175.46361.5741
AMTR_s00010p00247540amborella_trichopodaERM9436275.348862.3256cucumis_sativusKGN6446475.700962.6168
AMTR_s00010p00247540amborella_trichopodaERM9436268.372156.7442brassica_junceacds.BjuA07g26450S70.334958.3732
AMTR_s00010p00247540amborella_trichopodaERM9436268.837257.2093brassica_junceacds.BjuB03g25280S69.483657.7465
AMTR_s00010p00247540amborella_trichopodaERM9436269.302357.6744brassica_napusCDX6835469.95358.216
AMTR_s00010p00247540amborella_trichopodaERM9436266.976755.3488brassica_napusCDY2351468.899556.9378
AMTR_s00010p00247540amborella_trichopodaERM9436277.209364.6512prunus_persicaONI1159777.570164.9533
AMTR_s00010p00247540amborella_trichopodaERM9436273.953561.3953cajanus_cajanC.cajan_32015.t.cds173.271960.8295
AMTR_s00010p00247540amborella_trichopodaERM9436243.255835.3488malus_domestica_goldenCDS:MD05G0209000.184.545569.0909
AMTR_s00010p00247540amborella_trichopodaERM9436276.279162.7907malus_domestica_goldenCDS:MD10G0193900.176.635563.0841
AMTR_s00010p00247540amborella_trichopodaERM9436273.953560.4651glycine_maxKRH4368273.611160.1852
AMTR_s00010p00247540amborella_trichopodaERM9436275.348861.8605glycine_maxKRH1377374.654461.2903
AMTR_s00010p00247540amborella_trichopodaERM9436276.744264.186prunus_dulcisVVA2728177.102864.486
AMTR_s00010p00247540amborella_trichopodaERM9436274.418660medicago_truncatulaKEH3822674.074159.7222
AMTR_s00010p00247540amborella_trichopodaERM9436272.558158.6047medicago_truncatulaKEH2256171.889458.0645
AMTR_s00010p00247540amborella_trichopodaERM9436273.488461.8605lupinus_angustifoliusOIW1169873.488461.8605
AMTR_s00010p00247540amborella_trichopodaERM9436273.953560.9302lupinus_angustifoliusOIW0534473.611160.6481
AMTR_s00010p00247540amborella_trichopodaERM9436275.348860phaseolus_vulgarisESW2148575.348860
AMTR_s00010p00247540amborella_trichopodaERM9436272.09358.6047phaseolus_vulgarisESW1750375.609861.4634
AMTR_s00010p00247540amborella_trichopodaERM9436272.09359.5349pisum_sativumPsat1g015120.1.cds171.759359.2593
AMTR_s00010p00247540amborella_trichopodaERM9436273.953560.4651pisum_sativumPsat3g150240.1.cds173.271959.9078
AMTR_s00010p00247540amborella_trichopodaERM9436274.883760vigna_angularisKOM4354674.883760
AMTR_s00010p00247540amborella_trichopodaERM9436274.883760.9302vigna_unguiculataVigun05g189700.1.v1.2.CDS.174.883760.9302
AMTR_s00010p00247540amborella_trichopodaERM9436273.023358.6047vigna_unguiculataVigun01g011800.2.v1.2.CDS.173.023358.6047
AMTR_s00010p00247540amborella_trichopodaERM9436275.81462.3256manihot_esculentaOAY5443075.46362.037
AMTR_s00010p00247540amborella_trichopodaERM9436276.279164.6512solanum_lycopersicumSolyc02g031970.1.1.176.279164.6512
AMTR_s00010p00247540amborella_trichopodaERM9436269.767456.2791solanum_lycopersicumSolyc11g071530.1.1.173.170759.0244
AMTR_s00010p00247540amborella_trichopodaERM9436264.651253.0233capsicum_annuumPHT6896383.734968.6747
AMTR_s00010p00247540amborella_trichopodaERM9436276.744264.6512capsicum_annuumPHT7771076.388964.3519
AMTR_s00010p00247540amborella_trichopodaERM9436274.418660.4651vigna_radiataVradi05g23440.174.418660.4651
AMTR_s00010p00247540amborella_trichopodaERM9436276.744259.0698sesamum_indicumSIN_1006810.t.cds176.744259.0698
AMTR_s00010p00247540amborella_trichopodaERM9436271.627958.1395lactuca_sativacds-PLY61722.171.296357.8704
AMTR_s00010p00247540amborella_trichopodaERM9436263.255854.4186lactuca_sativacds-PLY80774.18573.125
AMTR_s00010p00247540amborella_trichopodaERM9436270.697758.6047helianthus_annuusCDS:HanXRQr2_Chr12g0523041.171.698159.434
AMTR_s00010p00247540amborella_trichopodaERM9436250.697734.4186lolium_perennecds.KYUSt_chr1.3920864.117643.5294
AMTR_s00010p00247540amborella_trichopodaERM9436261.860544.186avena_sativa_sangAVESA.00010b.r2.1DG0156590.1.CDS.168.205148.7179
AMTR_s00010p00247540amborella_trichopodaERM9436261.860544.6512avena_sativa_sangAVESA.00010b.r2.1AG0005840.1.CDS.168.205149.2308
AMTR_s00010p00247540amborella_trichopodaERM9436261.860544.186avena_sativa_sangAVESA.00010b.r2.1AG0037360.1.CDS.159.909942.7928
AMTR_s00010p00247540amborella_trichopodaERM9436271.162857.2093solanum_tuberosumPGSC0003DMT40004818674.634160
AMTR_s00010p00247540amborella_trichopodaERM9436275.81465.1163solanum_tuberosumPGSC0003DMT40003864675.81465.1163
AMTR_s00010p00247540amborella_trichopodaERM9436261.395345.1163oryza_rufipogonORUFI05G26910.166.666748.9899
AMTR_s00010p00247540amborella_trichopodaERM9436261.395346.0465oryza_brachyanthaOB05G32680.132.835824.6269
AMTR_s00010p00247540amborella_trichopodaERM9436261.395345.1163oryza_glaberrimaORGLA05G0216600.166.666748.9899
AMTR_s00010p00247540amborella_trichopodaERM9436261.860544.6512oryza_punctataOPUNC05G22690.167.512748.731
AMTR_s00010p00247540amborella_trichopodaERM9436262.790746.0465setaria_italicaKQL1442769.587651.0309
AMTR_s00010p00247540amborella_trichopodaERM9436262.325645.5814setaria_viridisTKW2599454.91840.1639
AMTR_s00010p00247540amborella_trichopodaERM9436262.325645.1163triticum_turgidumTRITD1Bv1G205990.168.367349.4898
AMTR_s00010p00247540amborella_trichopodaERM9436261.860545.1163secale_cerealeSECCE1Rv1G0054550.1.CDS.168.911950.2591
AMTR_s00010p00247540amborella_trichopodaERM9436262.325645.1163triticum_aestivumTraesCS1B02G403600.1.cds154.693939.5918
AMTR_s00010p00247540amborella_trichopodaERM9436262.325645.1163triticum_aestivumTraesCS1A02G381100.1.cds168.367349.4898
AMTR_s00010p00247540amborella_trichopodaERM9436262.325645.1163triticum_aestivumTraesCS1D02G388900.1.cds168.367349.4898
AMTR_s00010p00247540amborella_trichopodaERM9436262.325644.6512zea_maysZm00001eb343100_P00169.430149.7409
AMTR_s00010p00247540amborella_trichopodaERM9436261.860544.186zea_maysZm00001eb295090_P00167.857148.4694
AMTR_s00010p00247540amborella_trichopodaERM9436270.232656.2791chenopodium_quinoaAUR62001367-RA:cds69.266155.5046
AMTR_s00010p00247540amborella_trichopodaERM9436270.232657.2093chenopodium_quinoaAUR62025583-RA:cds69.266156.422
AMTR_s00010p00247540amborella_trichopodaERM9436255.348840.9302chara_brauniiGBG6832760.406144.6701
AMTR_s00010p00247540amborella_trichopodaERM9436228.837222.3256arabis_alpinaKFK4143983.783864.8649
AMTR_s00010p00247540amborella_trichopodaERM9436270.232654.4186arabis_alpinaKFK4143873.658557.0732
AMTR_s00010p00247540amborella_trichopodaERM9436271.627959.0698corylus_avellanaCav02g26380.t1.cds173.684260.7655
AMTR_s00010p00247540amborella_trichopodaERM9436271.627959.0698corylus_avellanaCav02g26440.t1.cds173.684260.7655
AMTR_s00010p00247540amborella_trichopodaERM9436262.325642.7907brachypodium_distachyonPNT7075566.666745.7711
AMTR_s00010p00247540amborella_trichopodaERM9436261.395345.1163oryza_glumipatulaOGLUM05G26720.166.666748.9899
AMTR_s00010p00247540amborella_trichopodaERM9436261.395344.6512oryza_meridionalisOMERI05G22420.166.666748.4848
AMTR_s00010p00247540amborella_trichopodaERM9436276.279160.4651ipomoea_trilobaitb10g17280.t276.279160.4651
AMTR_s00010p00247540amborella_trichopodaERM9436275.348863.2558kalanchoe_fedtschenkoiKaladp0068s0216.1.v1.1.CDS.175.348863.2558
AMTR_s00010p00247540amborella_trichopodaERM9436276.279163.2558eucalyptus_grandisKCW7554674.885862.1005
AMTR_s00010p00247540amborella_trichopodaERM9436273.488459.5349cynara_cardunculusKVH9383774.881560.6635
AMTR_s00010p00247540amborella_trichopodaERM9436273.488461.8605trifolium_pratenseTp57577_TGAC_v2_mRNA2939673.148161.5741
AMTR_s00010p00247540amborella_trichopodaERM9436273.953561.3953trifolium_pratenseTp57577_TGAC_v2_mRNA3015373.271960.8295
AMTR_s00010p00247540amborella_trichopodaERM9436277.209363.7209gossypium_raimondiiKJB3291677.570164.0187
AMTR_s00010p00247540amborella_trichopodaERM9436229.302321.8605arabidopsis_lyratafgenesh2_kg.5__213__AT2G03130.161.764746.0784
AMTR_s00010p00247540amborella_trichopodaERM9436266.976754.4186arabidopsis_lyratafgenesh2_kg.2__1274__AT1G70190.170.588257.3529
AMTR_s00010p00247540amborella_trichopodaERM9436261.395345.1163oryza_barthiiOBART05G25120.166.666748.9899
AMTR_s00010p00247540amborella_trichopodaERM9436265.581449.3023asparagus_officinalisONK8169671.573653.8071
AMTR_s00010p00247540amborella_trichopodaERM9436265.581452.5581musa_acuminataMa09_p20220.167.788554.3269
AMTR_s00010p00247540amborella_trichopodaERM9436266.976755.3488arabidopsis_hallerig03757.t1.cds169.565257.4879
AMTR_s00010p00247540amborella_trichopodaERM9436261.395346.5116eragrostis_tefEt_9B_063902.CDS167.346951.0204
AMTR_s00010p00247540amborella_trichopodaERM9436260.465145.1163eragrostis_tefEt_9A_063389.CDS57.017542.5439
AMTR_s00010p00247540amborella_trichopodaERM9436275.81464.186corymbia_citriodoracds-KAF8013792.175.115263.5945
AMTR_s00010p00247540amborella_trichopodaERM9436236.744230.6977corymbia_citriodoracds-KAF8013791.189.772775
AMTR_s00010p00247540amborella_trichopodaERM9436273.953560.9302rosa_chinensisPRQ3006874.647961.5023
AMTR_s00010p00247540amborella_trichopodaERM9436253.953545.5814juglans_regiacds.Jr_Scaffold_13_00050_p186.567273.1343
AMTR_s00010p00247540amborella_trichopodaERM9436272.09360juglans_regiacds.Jr11_20670_p174.162761.7225
AMTR_s00010p00247540amborella_trichopodaERM9436273.488462.7907juglans_regiacds.Jr03_09150_p175.598164.5933
AMTR_s00010p00247540amborella_trichopodaERM9436238.604732.5581juglans_regiacds.Jr08_19600_p181.372668.6274
AMTR_s00010p00247540amborella_trichopodaERM9436262.325646.0465saccharum_spontaneumSspon.07G0021950-1B-mRNA-1:cds63.207546.6981
AMTR_s00010p00247540amborella_trichopodaERM9436262.790746.5116saccharum_spontaneumSspon.07G0021910-3D-mRNA-1:cds69.948251.8135
AMTR_s00010p00247540amborella_trichopodaERM9436262.325645.1163triticum_dicoccoidesTRIDC1AG056030.364.734346.8599
AMTR_s00010p00247540amborella_trichopodaERM9436266.976755.3488brassica_oleraceaBo6g094890.168.899556.9378
AMTR_s00010p00247540amborella_trichopodaERM9436261.395345.1163oryza_indicaBGIOSGA017600-PA66.666748.9899
AMTR_s00010p00247540amborella_trichopodaERM9436266.976756.7442dioscorea_rotundataDRNTG_15734.1.cds170.243959.5122
AMTR_s00010p00247540amborella_trichopodaERM9436266.976756.7442dioscorea_rotundataDRNTG_18543.1.cds170.243959.5122
AMTR_s00010p00247540amborella_trichopodaERM9436261.860545.1163leersia_perrieriLPERR05G20900.167.171748.9899
AMTR_s00010p00247540amborella_trichopodaERM9436277.674459.0698olea_europaeaOE9A050179C258.802844.7183
AMTR_s00010p00247540amborella_trichopodaERM9436277.674460olea_europaeaOE9A049554C177.674460
AMTR_s00010p00247540amborella_trichopodaERM9436277.209362.7907actinidia_chinensisPSS1109277.209362.7907
AMTR_s00010p00247540amborella_trichopodaERM9436272.558161.3953quercus_subercds-POE57013.174.641263.1579
AMTR_s00010p00247540amborella_trichopodaERM9436272.09360.9302quercus_subercds-POE57012.145.994138.8724
AMTR_s00010p00247540amborella_trichopodaERM9436275.81461.3953nicotiana_attenuataOIT0337675.81461.3953
AMTR_s00010p00247540amborella_trichopodaERM9436271.162856.2791citrus_clementinaESR6189069.86355.2511
AMTR_s00010p00247540amborella_trichopodaERM9436273.023361.3953daucus_carotaKZM8708373.708961.9718
AMTR_s00010p00247540amborella_trichopodaERM9436243.255836.7442daucus_carotaKZM8019286.111173.1481
AMTR_s00010p00247540amborella_trichopodaERM9436272.558161.3953daucus_carotaKZN1168273.239461.9718
AMTR_s00010p00247540amborella_trichopodaERM9436274.418661.3953nymphaea_colorataNC9G0170280.1:cds77.294763.7681
AMTR_s00010p00247540amborella_trichopodaERM9436242.790729.7674ostreococcus_lucimarinusABO9984666.666746.3768
AMTR_s00010p00247540amborella_trichopodaERM9436274.883764.186coffea_canephoraCDP1127774.883764.186
AMTR_s00010p00247540amborella_trichopodaERM9436273.953561.8605pistacia_veracds-EVM0024563.17562.7358
AMTR_s00010p00247540amborella_trichopodaERM9436262.790746.5116digitaria_exilisDexi3B01G0017400.1:cds53.359739.5257
AMTR_s00010p00247540amborella_trichopodaERM9436261.395345.1163oryza_sativaOs05t0554100-0166.666748.9899
AMTR_s00010p00247540amborella_trichopodaERM9436261.860546.0465panicum_halliiPUZ6487357.081542.4893
AMTR_s00010p00247540amborella_trichopodaERM9436272.558160.4651quercus_lobataQL11p013638:mrna:CDS:374.641262.201
AMTR_s00010p00247540amborella_trichopodaERM9436261.860545.5814eragrostis_curvulaTVT9743138.328528.2421
AMTR_s00010p00247540amborella_trichopodaERM9436261.860545.5814eragrostis_curvulaTVT9879839.583329.1667
AMTR_s00010p00247540amborella_trichopodaERM9436229.302323.2558camelina_sativaCsa09g005350.1.cds179.746863.2911
AMTR_s00010p00247540amborella_trichopodaERM9436230.232621.8605camelina_sativaCsa04g008560.1.cds182.278559.4937
AMTR_s00010p00247540amborella_trichopodaERM9436265.581452.093camelina_sativaCsa07g037020.165.581452.093
AMTR_s00010p00247540amborella_trichopodaERM9436266.976754.8837camelina_sativaCsa05g089220.1.cds169.902957.2816
AMTR_s00010p00247540amborella_trichopodaERM9436266.976754.4186camelina_sativaCsa16g031810.1.cds169.902956.7961
AMTR_s00010p00247540amborella_trichopodaERM9436229.302323.2558camelina_sativaCsa06g003070.1.cds179.746863.2911
AMTR_s00010p00247540amborella_trichopodaERM9436247.441933.0233selaginella_moellendorffiiEFJ1278767.549747.0199
AMTR_s00010p00247540amborella_trichopodaERM9436247.441933.0233selaginella_moellendorffiiEFJ1394767.549747.0199
AMTR_s00010p00247540amborella_trichopodaERM9436275.348864.186vitis_viniferaVitvi01g00114_P00178.640866.9903
AMTR_s00010p00247540amborella_trichopodaERM9436270.232656.7442eutrema_salsugineumESQ2820169.907456.4815
AMTR_s00010p00247540amborella_trichopodaERM9436261.860544.6512echinochloa_crusgalliscaffold13.1002.cds68.556749.4845
AMTR_s00010p00247540amborella_trichopodaERM9436261.860545.1163echinochloa_crusgalliscaffold310.64.cds68.556750
AMTR_s00010p00247540amborella_trichopodaERM9436262.790744.6512echinochloa_crusgalliscaffold77.464.cds69.948249.7409
AMTR_s00010p00247540amborella_trichopodaERM9436262.325645.1163echinochloa_crusgalliscaffold1.352.cds69.072250
AMTR_s00010p00247540amborella_trichopodaERM9436277.209363.2558corchorus_capsularisOMO7495575.113161.5385
AMTR_s00010p00247540amborella_trichopodaERM9436277.674460fraxinus_excelsiorFRAEX38873_v2_000088380.3.cds63.498149.0494
AMTR_s00010p00247540amborella_trichopodaERM9436278.139559.5349fraxinus_excelsiorFRAEX38873_v2_000373980.1.cds178.139559.5349
AMTR_s00010p00247540amborella_trichopodaERM9436276.744262.7907citrullus_lanatusCla97C03G055380.177.102863.0841
AMTR_s00010p00247540amborella_trichopodaERM9436261.395345.1163oryza_nivaraONIVA05G26320.166.666748.9899

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression