Description

Ensembl ID AMTR_s00003p00212560 Gene ID Accession -
Symbol Alias - Full Name zinc knuckle (CCHC-type) family protein
Status Confidence Length 15557 bases Strand Minus strand
Position AmTr_v1.0_scaffold00003 : 4144266 - 4159822 RNA binding domain NFACT-R_1 , zf-CCHC
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN03282 NFACT-R_1 PF05670 5.2e-34 1
ERN03282 zf-CCHC PF00098 1.9e-06 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN03282 3348 1115aa ERN03282

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00003p00212560

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00003p00212560amborella_trichopodaERN0328248.699631.3901chondrus_crispusCDF3391748.655931.362
AMTR_s00003p00212560amborella_trichopodaERN0328278.56568.1614papaver_somniferumRZC6767877.453667.1972
AMTR_s00003p00212560amborella_trichopodaERN0328278.385768.0717papaver_somniferumRZC4380477.55167.3469
AMTR_s00003p00212560amborella_trichopodaERN0328271.479855.9641marchantia_polymorphaPTQ4266765.759151.4851
AMTR_s00003p00212560amborella_trichopodaERN0328278.475368.1614ficus_caricaFCD_00029405-RA:cds75.626665.6871
AMTR_s00003p00212560amborella_trichopodaERN0328278.923868.8789ficus_caricaFCD_00025558-RA:cds76.322666.6088
AMTR_s00003p00212560amborella_trichopodaERN0328277.668266.5471beta_vulgarisKMT1547376.098465.2021
AMTR_s00003p00212560amborella_trichopodaERN0328279.551669.5964theobroma_cacaoEOY0682579.766269.7842
AMTR_s00003p00212560amborella_trichopodaERN0328240.627829.5067chlamydomonas_reinhardtiiPNW7082550.614536.7598
AMTR_s00003p00212560amborella_trichopodaERN0328278.475367.6233cucumis_meloMELO3C021251.2.178.194867.3816
AMTR_s00003p00212560amborella_trichopodaERN0328275.874464.3049arabidopsis_thalianaAT5G49930.178.333366.3889
AMTR_s00003p00212560amborella_trichopodaERN0328278.654767.8027populus_trichocarpaPotri.008G101200.2.v4.176.862466.2577
AMTR_s00003p00212560amborella_trichopodaERN032829.327358.25112cucumis_sativusKGN4560586.666776.6667
AMTR_s00003p00212560amborella_trichopodaERN0328265.829656.6816cucumis_sativusKGN4560477.836767.0201
AMTR_s00003p00212560amborella_trichopodaERN0328276.412665.2018brassica_junceacds.BjuB08g34940S77.666466.2717
AMTR_s00003p00212560amborella_trichopodaERN0328276.681665.2915brassica_junceacds.BjuA03g34480S76.271264.942
AMTR_s00003p00212560amborella_trichopodaERN0328276.233265.1121brassica_napusCDX8317679.812268.169
AMTR_s00003p00212560amborella_trichopodaERN0328276.86165.6502brassica_napusCDY2144380.093568.4112
AMTR_s00003p00212560amborella_trichopodaERN0328279.461968.5202prunus_persicaONI2792877.312466.6667
AMTR_s00003p00212560amborella_trichopodaERN0328277.488868.1614cajanus_cajanC.cajan_42638.t80.747771.028
AMTR_s00003p00212560amborella_trichopodaERN0328277.578566.8161malus_domestica_goldenmRNA:MD16G013070075.414164.952
AMTR_s00003p00212560amborella_trichopodaERN0328278.385767.8027malus_domestica_goldenmRNA:MD13G013140075.215165.0602
AMTR_s00003p00212560amborella_trichopodaERN0328278.29667.713glycine_maxKRH3691976.37866.0542
AMTR_s00003p00212560amborella_trichopodaERN0328278.475368.5202glycine_maxKRH1188576.552966.8416
AMTR_s00003p00212560amborella_trichopodaERN0328279.551668.4305prunus_dulcisVVA2842777.399766.5794
AMTR_s00003p00212560amborella_trichopodaERN0328277.578568.0717lupinus_angustifoliusOIV9595277.163267.7074
AMTR_s00003p00212560amborella_trichopodaERN0328268.699655.5157physcomitrium_patensPp3c6_29680V3.262.175350.2435
AMTR_s00003p00212560amborella_trichopodaERN0328278.923867.713phaseolus_vulgarisESW1939277.396766.4028
AMTR_s00003p00212560amborella_trichopodaERN0328278.385767.8027pisum_sativumPsat1g162720.1.cds76.73466.374
AMTR_s00003p00212560amborella_trichopodaERN0328278.744468.5202vigna_angularisKOM5307075.559465.7487
AMTR_s00003p00212560amborella_trichopodaERN0328278.654768.4305vigna_unguiculataVigun06g133000.1.v1.277.405167.3433
AMTR_s00003p00212560amborella_trichopodaERN0328278.744468.5202manihot_esculentaOAY5618277.836967.7305
AMTR_s00003p00212560amborella_trichopodaERN0328276.86166.6368solanum_lycopersicumSolyc01g057850.3.175.307665.29
AMTR_s00003p00212560amborella_trichopodaERN0328278.923868.8789capsicum_annuumPHT9478777.057867.2504
AMTR_s00003p00212560amborella_trichopodaERN0328276.950766.8161vigna_radiataVradi10g06230.174.414664.6141
AMTR_s00003p00212560amborella_trichopodaERN0328278.923868.4305sesamum_indicumSIN_1016154.t79.494168.925
AMTR_s00003p00212560amborella_trichopodaERN0328277.309465.4709lactuca_sativacds-PLY87771.177.17165.3536
AMTR_s00003p00212560amborella_trichopodaERN0328214.349811.2108lactuca_sativacds-PLY71208.164.25750.2008
AMTR_s00003p00212560amborella_trichopodaERN0328277.219765.4709helianthus_annuusmRNA:HanXRQr2_Chr11g052076175.792364.2606
AMTR_s00003p00212560amborella_trichopodaERN0328276.233261.1659avena_sativa_ot3098cds.AVESA.00001b.r3.5Cg0000707.469.843956.0394
AMTR_s00003p00212560amborella_trichopodaERN0328230.58324.3946avena_sativa_ot3098cds.AVESA.00001b.r3.5Dg0000932.168.611754.7284
AMTR_s00003p00212560amborella_trichopodaERN0328277.937263.7668avena_sativa_ot3098cds.AVESA.00001b.r3.5Dg0000882.173.644160.2542
AMTR_s00003p00212560amborella_trichopodaERN0328277.847563.8565avena_sativa_ot3098cds.AVESA.00001b.r3.5Ag0001303.671.854358.9404
AMTR_s00003p00212560amborella_trichopodaERN0328277.578563.2287lolium_perennecds.KYUSt_chr5.778173.679760.0511
AMTR_s00003p00212560amborella_trichopodaERN0328276.681663.9462oryza_longistaminataKN539046.1_FGP01275.131862.6538
AMTR_s00003p00212560amborella_trichopodaERN0328230.58324.3946avena_sativa_sangAVESA.00010b.r2.5DG0988690.1.CDS67.12653.5433
AMTR_s00003p00212560amborella_trichopodaERN0328277.847563.4081avena_sativa_sangAVESA.00010b.r2.5CG0918370.2.CDS73.684260.017
AMTR_s00003p00212560amborella_trichopodaERN0328277.847563.8565avena_sativa_sangAVESA.00010b.r2.5AG0818910.1.CDS73.559360.339
AMTR_s00003p00212560amborella_trichopodaERN0328277.937263.7668avena_sativa_sangAVESA.00010b.r2.5DG0989660.1.CDS73.644160.2542
AMTR_s00003p00212560amborella_trichopodaERN0328242.959637.13solanum_tuberosumPGSC0003DMT40000310482.302471.134
AMTR_s00003p00212560amborella_trichopodaERN0328231.390126.5471solanum_tuberosumPGSC0003DMT40000310565.420655.3271
AMTR_s00003p00212560amborella_trichopodaERN0328278.56565.3812oryza_rufipogonORUFI12G17750.174.489861.9898
AMTR_s00003p00212560amborella_trichopodaERN0328279.013565.2915oryza_brachyanthaOB12G22900.175.492762.3822
AMTR_s00003p00212560amborella_trichopodaERN0328278.654765.2915oryza_punctataOPUNC12G14420.173.883761.3311
AMTR_s00003p00212560amborella_trichopodaERN0328279.372266.278setaria_italicaKQL1658573.383161.2769
AMTR_s00003p00212560amborella_trichopodaERN0328279.372266.1883setaria_viridisTKW2873373.383161.194
AMTR_s00003p00212560amborella_trichopodaERN0328279.103166.4574sorghum_bicolorKXG2371372.235960.688
AMTR_s00003p00212560amborella_trichopodaERN0328277.668263.9462triticum_turgidumTRITD5Bv1G043790.573.953960.8881
AMTR_s00003p00212560amborella_trichopodaERN0328277.488864.3946triticum_turgidumTRITD5Av1G046930.373.846261.3675
AMTR_s00003p00212560amborella_trichopodaERN0328226.188319.9103secale_cerealeSECCE5Rv1G0309110.159.836145.4918
AMTR_s00003p00212560amborella_trichopodaERN0328277.040463.4978secale_cerealeSECCE5Rv1G0309380.173.356160.4611
AMTR_s00003p00212560amborella_trichopodaERN0328277.399164.2152triticum_aestivumTraesCS5D02G098900.273.634861.0922
AMTR_s00003p00212560amborella_trichopodaERN0328277.488864.3946triticum_aestivumTraesCS5A02G087300.273.846261.3675
AMTR_s00003p00212560amborella_trichopodaERN0328277.757964.0359triticum_aestivumTraesCS5B02G093200.274.039360.9735
AMTR_s00003p00212560amborella_trichopodaERN0328278.475365.5605zea_maysZm00001eb136770_P00172.734860.7648
AMTR_s00003p00212560amborella_trichopodaERN0328279.282567.8924ananas_comosusAco013682.1.mrna180.656969.0693
AMTR_s00003p00212560amborella_trichopodaERN0328242.780328.3408caenorhabditis_elegansY82E9BR.18.151.791534.3105
AMTR_s00003p00212560amborella_trichopodaERN0328249.058331.9283drosophila_melanogasterFBpp029049255.141135.8871
AMTR_s00003p00212560amborella_trichopodaERN0328251.748934.1704homo_sapiensENSP0000029831053.624535.4089
AMTR_s00003p00212560amborella_trichopodaERN0328242.600924.1256saccharomyces_cerevisiaeYPL009C45.761125.9152
AMTR_s00003p00212560amborella_trichopodaERN0328275.42664.4843chenopodium_quinoaAUR62002591-RA:cds74.556763.7411
AMTR_s00003p00212560amborella_trichopodaERN0328266.995550.0448chara_brauniiGBG8951153.93540.2888
AMTR_s00003p00212560amborella_trichopodaERN0328276.143564.4843arabis_alpinaKFK2662577.534265.6621
AMTR_s00003p00212560amborella_trichopodaERN0328250.134540.1794corylus_avellanaCav01g08820.t163.163850.6215
AMTR_s00003p00212560amborella_trichopodaERN0328237.757832.6457corylus_avellanaCav01g08830.t177.96367.4074
AMTR_s00003p00212560amborella_trichopodaERN0328278.116664.1256brachypodium_distachyonKQJ8631374.892561.4789
AMTR_s00003p00212560amborella_trichopodaERN0328278.834165.5605oryza_glumipatulaOGLUM12G17540.174.744962.1599
AMTR_s00003p00212560amborella_trichopodaERN0328278.654765.3812oryza_meridionalisOMERI08G15360.174.574861.9898
AMTR_s00003p00212560amborella_trichopodaERN0328277.757966.8161ipomoea_trilobaitb13g21270.t176.387765.6388
AMTR_s00003p00212560amborella_trichopodaERN0328277.219767.3543kalanchoe_fedtschenkoiKaladp0061s0007.1.v1.175.065465.4752
AMTR_s00003p00212560amborella_trichopodaERN0328249.14831.3901galdieria_sulphurariaEME2956551.35932.8022
AMTR_s00003p00212560amborella_trichopodaERN0328277.488864.2152triticum_urartuTuG1812G0500000975.01.T0173.846261.1966
AMTR_s00003p00212560amborella_trichopodaERN0328278.29669.148eucalyptus_grandisKCW6134076.111667.2188
AMTR_s00003p00212560amborella_trichopodaERN0328251.031432.1076cyanidioschyzon_merolaeCMK242CT41.502626.1123
AMTR_s00003p00212560amborella_trichopodaERN0328273.72263.6771cynara_cardunculusKVH9976076.394165.9851
AMTR_s00003p00212560amborella_trichopodaERN0328274.080764.574trifolium_pratenseTp57577_TGAC_v2_mRNA1045475.779866.055
AMTR_s00003p00212560amborella_trichopodaERN032825.919285.47085trifolium_pratenseTp57577_TGAC_v2_mRNA3246290.41183.5616
AMTR_s00003p00212560amborella_trichopodaERN0328279.282569.417gossypium_raimondiiKJB2878079.353769.4794
AMTR_s00003p00212560amborella_trichopodaERN0328275.695164.7534arabidopsis_lyratafgenesh1_pm.C_scaffold_800073878.148166.8519
AMTR_s00003p00212560amborella_trichopodaERN0328277.040463.7668oryza_barthiiOBART12G15980.174.56661.7188
AMTR_s00003p00212560amborella_trichopodaERN0328277.757967.8027asparagus_officinalisONK7877475.85366.1417
AMTR_s00003p00212560amborella_trichopodaERN0328279.372269.417musa_acuminataMa03_p25680.177.563567.8352
AMTR_s00003p00212560amborella_trichopodaERN0328276.412664.9327arabidopsis_hallerig27090.t178.888967.037
AMTR_s00003p00212560amborella_trichopodaERN0328277.847565.3812eragrostis_tefEt_10B_003708.CDS73.434961.6751
AMTR_s00003p00212560amborella_trichopodaERN0328277.578565.3812eragrostis_tefEt_10A_001623.CDS73.367361.8321
AMTR_s00003p00212560amborella_trichopodaERN0328278.654768.6996corymbia_citriodoracds-KAF8017752.176.327266.6667
AMTR_s00003p00212560amborella_trichopodaERN0328279.013568.3408rosa_chinensisPRQ3952877.758267.2551
AMTR_s00003p00212560amborella_trichopodaERN0328279.013568.3408juglans_regiacds.Jr12_09910_p176.809166.4342
AMTR_s00003p00212560amborella_trichopodaERN0328253.363243.5874saccharum_spontaneumSspon.02G0028780-2B-mRNA-1:cds65.964553.8803
AMTR_s00003p00212560amborella_trichopodaERN0328237.219731.2108saccharum_spontaneumSspon.02G0059640-1D-mRNA-168.59557.5207
AMTR_s00003p00212560amborella_trichopodaERN0328277.399164.2152triticum_dicoccoidesTRIDC5AG013380.775.108862.3151
AMTR_s00003p00212560amborella_trichopodaERN0328277.668264.1256triticum_dicoccoidesTRIDC5BG015470.975.238962.1199
AMTR_s00003p00212560amborella_trichopodaERN0328276.950765.6502brassica_oleraceaBo00935s040.178.715667.156
AMTR_s00003p00212560amborella_trichopodaERN0328276.771363.5874oryza_indicaBGIOSGA035998-PA74.241161.4918
AMTR_s00003p00212560amborella_trichopodaERN0328229.596419.6413ciona_savignyiENSCSAVP0000000594958.303938.6926
AMTR_s00003p00212560amborella_trichopodaERN0328210.04486.36771ciona_savignyiENSCSAVP0000000202258.947437.3684
AMTR_s00003p00212560amborella_trichopodaERN0328275.42664.574dioscorea_rotundataDRNTG_09490.275.561564.69
AMTR_s00003p00212560amborella_trichopodaERN0328226.098721.6143dioscorea_rotundataDRNTG_02630.159.753649.4867
AMTR_s00003p00212560amborella_trichopodaERN032826.45745.91928dioscorea_rotundataDRNTG_02632.198.630190.411
AMTR_s00003p00212560amborella_trichopodaERN0328278.744465.2018leersia_perrieriLPERR12G13170.171.967259.5902
AMTR_s00003p00212560amborella_trichopodaERN0328278.744467.2646olea_europaeaOE9A100876C375.75564.711
AMTR_s00003p00212560amborella_trichopodaERN0328210.49339.59641olea_europaeaOE9A065997C188.636481.0606
AMTR_s00003p00212560amborella_trichopodaERN0328278.56567.5336olea_europaeaOE9A001027C175.713165.0821
AMTR_s00003p00212560amborella_trichopodaERN0328272.825163.2287actinidia_chinensisPSS0155376.0366.0112
AMTR_s00003p00212560amborella_trichopodaERN0328279.282569.417actinidia_chinensisPSR8519976.736167.1875
AMTR_s00003p00212560amborella_trichopodaERN0328279.641369.5964quercus_subercds-POF12411.177.150367.4196
AMTR_s00003p00212560amborella_trichopodaERN0328278.654767.8027citrus_clementinaESR3254075.668765.2286
AMTR_s00003p00212560amborella_trichopodaERN0328273.901363.2287brassica_rapa_ro18A03p028880.1_BraROA.178.55167.2069
AMTR_s00003p00212560amborella_trichopodaERN0328276.322963.3184daucus_carotaKZN0987074.323161.6594
AMTR_s00003p00212560amborella_trichopodaERN0328278.654767.5336daucus_carotaKZM8287378.233767.1722
AMTR_s00003p00212560amborella_trichopodaERN0328278.654765.7399nymphaea_colorataNC10G0166920.1:cds76.527163.9616
AMTR_s00003p00212560amborella_trichopodaERN0328246.816130.852ostreococcus_lucimarinusABO9830148.830732.1796
AMTR_s00003p00212560amborella_trichopodaERN0328278.475367.0852coffea_canephoraCDO9872876.889365.7293
AMTR_s00003p00212560amborella_trichopodaERN0328276.233262.7803aegilops_tauschiiAET5Gv20237600.573.402460.4491
AMTR_s00003p00212560amborella_trichopodaERN0328279.910369.0583pistacia_veracds-EVM0004147.178.226567.6032
AMTR_s00003p00212560amborella_trichopodaERN0328277.757964.3049digitaria_exilisDexi3B01G0034070.1:cds74.805961.8637
AMTR_s00003p00212560amborella_trichopodaERN0328279.730965.5605digitaria_exilisDexi3A01G0032520.1:cds73.898660.7648
AMTR_s00003p00212560amborella_trichopodaERN0328278.56565.3812oryza_sativaOs12t0564600-0175.582462.8991
AMTR_s00003p00212560amborella_trichopodaERN0328279.282565.7399panicum_halliiPUZ6747073.421960.8804
AMTR_s00003p00212560amborella_trichopodaERN0328278.834169.148quercus_lobataQL06p013322:mrna76.368466.9852
AMTR_s00003p00212560amborella_trichopodaERN0328277.578565.2018eragrostis_curvulaTVU4971772.083360.5833
AMTR_s00003p00212560amborella_trichopodaERN0328275.964164.2152camelina_sativaCsa18g020460.178.425966.2963
AMTR_s00003p00212560amborella_trichopodaERN0328275.964164.4843camelina_sativaCsa11g081260.170.93860.2178
AMTR_s00003p00212560amborella_trichopodaERN0328275.605463.8565camelina_sativaCsa02g037310.178.055665.9259
AMTR_s00003p00212560amborella_trichopodaERN0328220.717514.5291selaginella_moellendorffiiEFJ3475160.471242.4084
AMTR_s00003p00212560amborella_trichopodaERN0328267.982153.6323selaginella_moellendorffiiEFJ3435572.053256.8441
AMTR_s00003p00212560amborella_trichopodaERN032828.968616.09865selaginella_moellendorffiiEFJ3475062.111842.236
AMTR_s00003p00212560amborella_trichopodaERN032828.340816.54709selaginella_moellendorffiiEFJ3435672.09356.5891
AMTR_s00003p00212560amborella_trichopodaERN0328268.699654.2601selaginella_moellendorffiiEFJ3124770.729555.8633
AMTR_s00003p00212560amborella_trichopodaERN0328280.448471.1211vitis_viniferaVitvi05g00168_P00178.272369.1972
AMTR_s00003p00212560amborella_trichopodaERN0328226.00921.9731vitis_viniferaVitvi05g04051_P00178.378466.2162
AMTR_s00003p00212560amborella_trichopodaERN0328218.744415.6951vitis_viniferaVitvi05g04064_P00175.179962.9496
AMTR_s00003p00212560amborella_trichopodaERN0328213.542612.0179vitis_viniferaVitvi05g04065_P00188.823578.8235
AMTR_s00003p00212560amborella_trichopodaERN0328217.309414.5291vitis_viniferaVitvi05g00191_P00164.765154.3624
AMTR_s00003p00212560amborella_trichopodaERN0328276.502265.2915eutrema_salsugineumESQ4366177.828566.4234
AMTR_s00003p00212560amborella_trichopodaERN0328278.923865.9193echinochloa_crusgalliscaffold76.44.cds68.058856.8445
AMTR_s00003p00212560amborella_trichopodaERN0328278.923865.7399echinochloa_crusgalliscaffold29.424.cds73.272361.0325
AMTR_s00003p00212560amborella_trichopodaERN0328278.744465.2915echinochloa_crusgalliscaffold240.58.cds73.044960.5657
AMTR_s00003p00212560amborella_trichopodaERN0328278.923868.0717corchorus_capsularisOMO5343479.63868.6878
AMTR_s00003p00212560amborella_trichopodaERN0328277.757967.713fraxinus_excelsiorFRAEX38873_v2_000143700.1.cds74.67765.0301
AMTR_s00003p00212560amborella_trichopodaERN0328278.56567.9821citrullus_lanatusCla97C06G113790.178.284267.7391
AMTR_s00003p00212560amborella_trichopodaERN0328278.744465.2915oryza_nivaraONIVA03G19130.274.659961.9048

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression