RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	AMTR_s00002p00244430	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Ribosomal protein L12 family protein
Status	Confidence	Length	654 bases	Strand	Plus strand
Position	AmTr_v1.0_scaffold00002 : 5856184 - 5856837	RNA binding domain	Ribosomal_L12
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ERN01246	Ribosomal_L12	PF00542	1.3e-22	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ERN01246	654	217aa	ERN01246

Gene Model

Click here to download AMTR_s00002p00244430's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download AMTR_s00002p00244430's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AMTR_s00002p00244430	amborella_trichopoda	ERM94362	60	42.3256	amborella_trichopoda	ERN01246	59.447	41.9355
AMTR_s00002p00244430	amborella_trichopoda	ERN10367	74.3363	52.2124	amborella_trichopoda	ERN01246	38.7097	27.1889
AMTR_s00002p00244430	amborella_trichopoda	ERN19832	60.8187	38.5965	amborella_trichopoda	ERN01246	47.9263	30.4147
AMTR_s00002p00244430	amborella_trichopoda	ERN18632	55.4878	41.4634	amborella_trichopoda	ERN01246	41.9355	31.3364
AMTR_s00002p00244430	amborella_trichopoda	ERN19573	55.0562	36.5169	amborella_trichopoda	ERN01246	45.1613	29.9539
AMTR_s00002p00244430	amborella_trichopoda	ERM97278	52.7919	37.5635	amborella_trichopoda	ERN01246	47.9263	34.1014

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	57.6037	49.3088	papaver_somniferum	RZC66477	63.1313	54.0404
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	58.9862	49.3088	papaver_somniferum	RZC44661	64.6465	54.0404
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	56.682	42.3963	marchantia_polymorpha	PTQ36259	53.7118	40.1747
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	56.682	48.3871	cannabis_sativa_female	cds.evm.model.04.2053	66.8478	57.0652
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	54.8387	47.0046	ficus_carica	FCD_00008664-RA:cds	63.6364	54.5455
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	57.1429	43.318	beta_vulgaris	KMT02450	65.2632	49.4737
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	63.1336	52.5346	theobroma_cacao	EOX90970	69.898	58.1633
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	58.0645	51.1521	cucumis_melo	MELO3C007869.2.1	62.3762	54.9505
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	54.3779	44.7005	arabidopsis_thaliana	AT4G36420.1	65.9218	54.1899
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	61.2903	52.0737	populus_trichocarpa	Potri.007G019100.1.v4.1	69.2708	58.8542
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	58.9862	51.1521	cucumis_sativus	KGN48876	63.3663	54.9505
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	52.0737	41.0138	brassica_juncea	cds.BjuB02g74500S	66.0819	52.0468
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	52.0737	41.0138	brassica_juncea	cds.BjuA03g04440S	66.0819	52.0468
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	51.1521	41.4747	brassica_napus	CDY59698	64.9123	52.6316
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	52.0737	41.4747	brassica_napus	CDY64925	66.0819	52.6316
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	57.6037	47.4654	prunus_persica	ONH96955	65.1042	53.6458
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	57.6037	47.0046	prunus_persica	ONH90750	64.7668	52.8497
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	46.083	39.1705	cajanus_cajan	C.cajan_01163.t.cds1	77.5194	65.8915
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	57.1429	47.9263	malus_domestica_golden	mRNA:MD02G0118900	62.6263	52.5253
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	58.0645	47.9263	malus_domestica_golden	mRNA:MD15G0221400	63.9594	52.7919
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	58.0645	45.6221	glycine_max	KRH69853	63.3166	49.7487
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	48.3871	36.8664	glycine_max	KRH08160	52.2388	39.801
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	57.1429	47.0046	prunus_dulcis	VVA09805	64.5833	53.125
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	57.6037	47.0046	prunus_dulcis	VVA36334	64.7668	52.8497
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	56.2212	43.318	medicago_truncatula	AET03861	62.5641	48.2051
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	42.3963	36.8664	lupinus_angustifolius	OIV93601	74.7967	65.0406
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	56.2212	46.5438	phaseolus_vulgaris	ESW28082	61.9289	51.269
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	57.6037	45.6221	pisum_sativum	Psat4g096320.2.cds1	61.8812	49.0099
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	56.682	47.0046	vigna_angularis	KOM32265	62.4365	51.7766
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	56.682	47.0046	vigna_unguiculata	Vigun03g263400.1.v1.2.CDS.1	62.4365	51.7766
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	60.8295	50.6912	manihot_esculenta	OAY57459	70.2128	58.5106
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	61.2903	52.9954	manihot_esculenta	OAY60804	70.7447	61.1702
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	36.4055	33.1797	capsicum_annuum	PHT72318	45.9302	41.8605
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	59.447	51.6129	capsicum_annuum	PHT91944	51.6	44.8
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	55.7604	47.0046	vigna_radiata	Vradi07g00830.1	61.4213	51.7766
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	61.7512	51.6129	sesamum_indicum	SIN_1022231.t.cds1	69.4301	58.0311
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	61.2903	50.2304	lactuca_sativa	cds-PLY84697.1	66.8342	54.7739
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	44.7005	37.788	helianthus_annuus	CDS:HanXRQr2_Chr08g0349831.1	63.8158	53.9474
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	58.9862	48.8479	helianthus_annuus	CDS:HanXRQr2_Chr07g0295201.1	71.9101	59.5506
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	48.3871	36.4055	avena_sativa_ot3098	cds.AVESA.00001b.r3.7Cg0000872.1	60.3448	45.4023
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	50.6912	37.3272	lolium_perenne	cds.KYUSt_chr4.10992	56.9948	41.9689
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	50.2304	37.3272	lolium_perenne	cds.KYUSt_chr4.10985	37.457	27.8351
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	27.6498	23.0415	oryza_longistaminata	KN543897.1_FGP001	85.7143	71.4286
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	27.6498	23.0415	oryza_longistaminata	KN543399.1_FGP001	85.7143	71.4286
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	49.7696	37.3272	avena_sativa_sang	AVESA.00010b.r2.4AG0605400.1.CDS	48.2143	36.1607
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	49.7696	36.8664	avena_sativa_sang	AVESA.00010b.r2.4DG0749050.1.CDS.1	56.25	41.6667
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	48.3871	36.4055	avena_sativa_sang	AVESA.00010b.r2.7CG0701050.1.CDS.1	62.8743	47.3054
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	59.447	49.3088	solanum_tuberosum	PGSC0003DMT400003672	32.6582	27.0886
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	51.1521	37.788	oryza_rufipogon	ORUFI03G34570.1	64.5349	47.6744
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	51.1521	38.7097	oryza_brachyantha	OB03G40280.1	65.2941	49.4118
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	50.6912	37.788	oryza_glaberrima	ORGLA03G0301200.1	63.2184	47.1264
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	50.6912	38.7097	oryza_punctata	OPUNC03G30390.1	64.3275	49.1228
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	51.1521	39.6313	setaria_italica	KQK87245	66.4671	51.497
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	51.1521	39.6313	setaria_viridis	TKV91508	66.4671	51.497
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	48.8479	38.7097	sorghum_bicolor	EER93504	63.8554	50.6024
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	48.8479	35.9447	triticum_turgidum	TRITD4Bv1G021700.1	64.6341	47.561
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	49.3088	35.9447	triticum_turgidum	TRITD4Av1G184290.2	58.1522	42.3913
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	48.8479	35.9447	secale_cereale	SECCE4Rv1G0221920.1.CDS.1	64.6341	47.561
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	48.8479	35.9447	secale_cereale	SECCE4Rv1G0221890.1.CDS.1	64.6341	47.561
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	48.8479	35.9447	triticum_aestivum	TraesCS4D02G063700.1.cds1	64.6341	47.561
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	49.3088	35.9447	triticum_aestivum	TraesCS4A02G250000.1	58.1522	42.3913
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	48.8479	35.9447	triticum_aestivum	TraesCS4B02G064700.1.cds1	64.6341	47.561
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	48.8479	37.788	zea_mays	Zm00001eb215450_P001	63.4731	49.1018
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	53.917	45.1613	ananas_comosus	Aco000201.1.mrna1.cds1	66.8571	56
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	58.0645	43.318	chenopodium_quinoa	AUR62017607-RA:cds	64.9485	48.4536
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	55.2995	39.6313	chara_braunii	GBG68327	60.9137	43.6548
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	59.447	49.3088	corylus_avellana	Cav02g02670.t1.cds1	65.4822	54.3147
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	50.2304	38.2488	brachypodium_distachyon	KQK13351	65.6627	50
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	50.2304	37.788	oryza_glumipatula	OGLUM03G32850.1	62.6437	47.1264
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	50.6912	37.788	oryza_meridionalis	OMERI03G29810.1	61.7978	46.0674
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	57.1429	46.5438	ipomoea_triloba	itb05g24830.t1	61.0837	49.7537
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	58.5253	47.4654	kalanchoe_fedtschenkoi	Kaladp0076s0202.1.v1.1.CDS.1	63.8191	51.7588
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	61.2903	52.0737	cynara_cardunculus	KVI08799	66.8342	56.7839
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	58.5253	46.083	trifolium_pratense	Tp57577_TGAC_v2_mRNA22269	64.467	50.7614
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	62.212	52.0737	gossypium_raimondii	KJB43431	68.8775	57.6531
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	53.917	44.7005	arabidopsis_lyrata	fgenesh2_kg.7__427__AT4G36420.1	65.3631	54.1899
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	50.6912	37.788	oryza_barthii	OBART03G33170.1	63.2184	47.1264
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	55.7604	45.1613	musa_acuminata	Ma00_p03890.1	67.2222	54.4444
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	53.917	44.7005	arabidopsis_halleri	g03082.t1.cds1	65.3631	54.1899
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	50.2304	36.8664	eragrostis_tef	Et_4A_033724.CDS	58.6021	43.0108
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	50.2304	38.2488	eragrostis_tef	Et_4B_039626.CDS	54.7739	41.7085
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	60.3687	48.8479	corymbia_citriodora	cds-KAF8018715.1	70.4301	56.9892
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	55.7604	45.6221	rosa_chinensis	PRQ47499	57.8947	47.3684
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	59.9078	49.7696	juglans_regia	cds.Jr11_07250_p1	64.0394	53.202
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	59.9078	49.7696	juglans_regia	cds.Jr11_07240_p1	64.0394	53.202
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	48.8479	38.2488	saccharum_spontaneum	Sspon.01G0061290-1P-mRNA-1:cds	63.4731	49.7006
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	48.3871	37.788	saccharum_spontaneum	Sspon.01G0061290-1D-mRNA-1:cds	63.253	49.3976
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	49.3088	36.4055	triticum_dicoccoides	TRIDC4AG039230.1	65.2439	48.1707
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	48.8479	35.9447	triticum_dicoccoides	TRIDC4BG010050.1	64.6341	47.561
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	51.6129	41.4747	brassica_oleracea	Bo7g117950.1	65.4971	52.6316
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	50.6912	37.788	oryza_indica	BGIOSGA009859-PA	63.2184	47.1264
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	54.3779	48.3871	dioscorea_rotundata	DRNTG_23721.1.cds1	62.766	55.8511
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	48.3871	36.4055	leersia_perrieri	LPERR03G27730.1	65.625	49.375
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	58.9862	48.8479	olea_europaea	OE9A095420C1	66.3212	54.9223
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	62.6728	53.917	actinidia_chinensis	PSS36516	66.3415	57.0732
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	58.0645	47.4654	prunus_avium	Pav_sc0000663.1_g360.1.mk:CDS:1	65.285	53.3679
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	50.6912	41.0138	prunus_avium	Pav_sc0000040.1_g200.1.br:mrna	43.8247	35.4582
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	58.9862	50.2304	quercus_suber	cds-POE65754.1	66.3212	56.4767
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	47.4654	39.1705	quercus_suber	cds-POF23561.1	37.8676	31.25
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	58.9862	51.1521	nicotiana_attenuata	OIT06359	62.7451	54.4118
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	55.2995	42.3963	citrus_clementina	ESR38846	64.8649	49.7297
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	58.5253	46.083	daucus_carota	KZM88900	65.4639	51.5464
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	65.4378	52.5346	nymphaea_colorata	NC1G0108890.1:cds	46.2541	37.1335
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	39.1705	30.8756	ostreococcus_lucimarinus	ABO99846	61.5942	48.5507
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	52.9954	42.3963	coffea_canephora	CDP01964	52.9954	42.3963
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	48.8479	35.9447	aegilops_tauschii	AET4Gv20133200.1	64.6341	47.561
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	58.9862	48.3871	pistacia_vera	cds-EVM0012165.1	68.8172	56.4516
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	50.6912	39.1705	digitaria_exilis	Dexi9B01G0009420.1:cds	65.8683	50.8982
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	50.6912	40.0922	digitaria_exilis	Dexi9A01G0009770.1:cds	65.8683	52.0958
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	50.6912	37.788	oryza_sativa	Os03t0734400-01	62.8571	46.8571
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	50.6912	39.1705	panicum_hallii	PUZ37155	65.8683	50.8982
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	58.9862	50.2304	quercus_lobata	QL10p007541:mrna:CDS:5	66.3212	56.4767
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	50.2304	38.2488	eragrostis_curvula	TVU45222	38.79	29.5374
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	53.4562	42.3963	camelina_sativa	Csa12g005040.1.cds1	65.1685	51.6854
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	54.3779	42.8571	camelina_sativa	Csa10g004810.1.cds1	66.6667	52.5424
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	54.8387	43.7788	camelina_sativa	Csa11g005330.1.cds1	66.1111	52.7778
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	47.0046	35.023	selaginella_moellendorffii	EFJ12787	67.5497	50.3311
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	47.0046	35.023	selaginella_moellendorffii	EFJ13947	67.5497	50.3311
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	56.682	47.9263	vitis_vinifera	Vitvi04g02132_P001	65.0794	55.0265
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	56.2212	44.7005	eutrema_salsugineum	ESQ53456	67.033	53.2967
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	51.6129	39.1705	echinochloa_crusgalli	scaffold20.892.cds	67.0659	50.8982
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	51.6129	39.1705	echinochloa_crusgalli	scaffold35.253.cds	67.0659	50.8982
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	51.6129	38.7097	echinochloa_crusgalli	scaffold3.1224.cds	67.0659	50.2994
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	59.9078	49.7696	corchorus_capsularis	OMO56964	66.3265	55.102
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	58.0645	46.5438	fraxinus_excelsior	FRAEX38873_v2_000034380.2.cds1	65.285	52.3316
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	58.0645	50.6912	citrullus_lanatus	Cla97C01G019370.1	62.3762	54.4554
AMTR_s00002p00244430	amborella_trichopoda	ERN01246	50.6912	37.788	oryza_nivara	ONIVA03G34880.1	63.2184	47.1264

Gene Ontology

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Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression