Description

Ensembl ID AMTR_s00002p00026670 Gene ID Accession -
Symbol Alias - Full Name hypothetical protein
Status Confidence Length 3132 bases Strand Plus strand
Position AmTr_v1.0_scaffold00002 : 160519 - 163650 RNA binding domain MRP_L53
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERN00935 MRP_L53 PF10780 3.5e-11 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERN00935 501 166aa ERN00935

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00002p00026670amborella_trichopodaERN1173294.565291.3043amborella_trichopodaERN0093552.409650.6024

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00002p00026670amborella_trichopodaERN0093563.25354.8193papaver_somniferumRZC4478982.031271.0938
AMTR_s00002p00026670amborella_trichopodaERN0093563.25354.8193papaver_somniferumRZC6660582.031271.0938
AMTR_s00002p00026670amborella_trichopodaERN0093551.807237.9518marchantia_polymorphaPTQ2894773.504353.8462
AMTR_s00002p00026670amborella_trichopodaERN0093563.25354.8193cannabis_sativa_femalecds.evm.model.02.263.1.5bd9b13482.031271.0938
AMTR_s00002p00026670amborella_trichopodaERN0093562.650654.2169ficus_caricaFCD_00003478-RA:cds81.2570.3125
AMTR_s00002p00026670amborella_trichopodaERN0093559.036151.2048ficus_caricaFCD_00004781-RA:cds65.333356.6667
AMTR_s00002p00026670amborella_trichopodaERN0093560.843451.8072beta_vulgarisKMS9963278.906267.1875
AMTR_s00002p00026670amborella_trichopodaERN0093560.24151.8072theobroma_cacaoEOY1496959.171650.8876
AMTR_s00002p00026670amborella_trichopodaERN0093559.638651.8072cucumis_meloMELO3C003771.2.148.058341.7476
AMTR_s00002p00026670amborella_trichopodaERN0093561.445852.4096arabidopsis_thalianaAT5G39600.180.31568.5039
AMTR_s00002p00026670amborella_trichopodaERN0093558.433751.8072populus_trichocarpaPotri.012G106900.4.v4.174.045865.6489
AMTR_s00002p00026670amborella_trichopodaERN0093562.650655.4217populus_trichocarpaPotri.004G228566.1.v4.181.2571.875
AMTR_s00002p00026670amborella_trichopodaERN0093562.650655.4217cucumis_sativusKGN6001481.889872.4409
AMTR_s00002p00026670amborella_trichopodaERN0093562.048253.012brassica_junceacds.BjuB01g27560S80.468868.75
AMTR_s00002p00026670amborella_trichopodaERN0093562.048253.012brassica_napusCDX7444380.468868.75
AMTR_s00002p00026670amborella_trichopodaERN0093562.048253.012brassica_napusCDY3025780.468868.75
AMTR_s00002p00026670amborella_trichopodaERN0093562.650653.012prunus_persicaONI3245281.2568.75
AMTR_s00002p00026670amborella_trichopodaERN0093558.433750prunus_persicaONI2911874.615463.8462
AMTR_s00002p00026670amborella_trichopodaERN0093540.361432.5301cajanus_cajanC.cajan_29238.t.cds167.676854.5455
AMTR_s00002p00026670amborella_trichopodaERN0093540.361432.5301cajanus_cajanC.cajan_00248.t.cds167.676854.5455
AMTR_s00002p00026670amborella_trichopodaERN0093563.25352.4096malus_domestica_goldenmRNA:MD02G020120082.031267.9688
AMTR_s00002p00026670amborella_trichopodaERN0093563.25352.4096malus_domestica_goldenmRNA:MD07G006010082.031267.9688
AMTR_s00002p00026670amborella_trichopodaERN0093560.24150glycine_maxKRH5172578.12564.8438
AMTR_s00002p00026670amborella_trichopodaERN0093560.843450.6024glycine_maxKRH6106278.906265.625
AMTR_s00002p00026670amborella_trichopodaERN0093562.650653.6145prunus_dulcisVVA2245681.2569.5312
AMTR_s00002p00026670amborella_trichopodaERN0093558.433750prunus_dulcisVVA3483874.615463.8462
AMTR_s00002p00026670amborella_trichopodaERN0093558.433748.7952medicago_truncatulaAES5905875.781263.2812
AMTR_s00002p00026670amborella_trichopodaERN0093559.638649.3976medicago_truncatulaKEH3623677.343864.0625
AMTR_s00002p00026670amborella_trichopodaERN0093563.25354.2169lupinus_angustifoliusOIV9759882.031270.3125
AMTR_s00002p00026670amborella_trichopodaERN0093554.216942.1687physcomitrium_patensPAC:32914218.CDS.163.829849.6454
AMTR_s00002p00026670amborella_trichopodaERN0093560.24149.3976phaseolus_vulgarisESW0806778.12564.0625
AMTR_s00002p00026670amborella_trichopodaERN0093559.638650pisum_sativumPsat5g014400.1.cds77.343864.8438
AMTR_s00002p00026670amborella_trichopodaERN0093560.24150vigna_unguiculataVigun09g252100.1.v1.278.12564.8438
AMTR_s00002p00026670amborella_trichopodaERN0093554.216942.1687manihot_esculentaOAY4084958.441645.4545
AMTR_s00002p00026670amborella_trichopodaERN0093561.445853.6145manihot_esculentaOAY2265879.687569.5312
AMTR_s00002p00026670amborella_trichopodaERN0093559.638648.7952capsicum_annuumPHT8491177.343863.2812
AMTR_s00002p00026670amborella_trichopodaERN0093557.228948.7952vigna_radiataVradi05g13760.168.840658.6957
AMTR_s00002p00026670amborella_trichopodaERN0093559.638651.8072sesamum_indicumSIN_1009082.t57.225449.711
AMTR_s00002p00026670amborella_trichopodaERN0093557.831348.7952sesamum_indicumSIN_1002373.t.cds158.895749.6933
AMTR_s00002p00026670amborella_trichopodaERN0093562.650655.4217lactuca_sativacds-PLY89715.181.2571.875
AMTR_s00002p00026670amborella_trichopodaERN0093562.650655.4217helianthus_annuusmRNA:HanXRQr2_Chr04g017922181.2571.875
AMTR_s00002p00026670amborella_trichopodaERN0093563.855456.6265helianthus_annuusmRNA:HanXRQr2_Chr15g069457182.812573.4375
AMTR_s00002p00026670amborella_trichopodaERN0093563.25352.4096solanum_tuberosumPGSC0003DMT40000954682.031267.9688
AMTR_s00002p00026670amborella_trichopodaERN0093560.24145.7831ananas_comosusAco004433.1.mrna177.519458.9147
AMTR_s00002p00026670amborella_trichopodaERN0093560.24151.2048chenopodium_quinoaAUR62035723-RA:cds68.965558.6207
AMTR_s00002p00026670amborella_trichopodaERN0093562.048253.6145ipomoea_trilobaitb01g05120.t181.102470.0787
AMTR_s00002p00026670amborella_trichopodaERN0093557.228947.5904ipomoea_trilobaitb01g34980.t178.512465.2893
AMTR_s00002p00026670amborella_trichopodaERN0093562.048253.6145ipomoea_trilobaitb12g12310.t181.102470.0787
AMTR_s00002p00026670amborella_trichopodaERN0093539.75930.7229kalanchoe_fedtschenkoiKaladp0095s0739.1.v1.1.CDS.174.157357.3034
AMTR_s00002p00026670amborella_trichopodaERN0093553.614545.1807kalanchoe_fedtschenkoiKaladp1213s0002.1.v1.174.166762.5
AMTR_s00002p00026670amborella_trichopodaERN0093560.24152.4096kalanchoe_fedtschenkoiKaladp0053s0166.1.v1.176.335966.4122
AMTR_s00002p00026670amborella_trichopodaERN0093560.24153.012eucalyptus_grandisKCW6793280.645270.9677
AMTR_s00002p00026670amborella_trichopodaERN0093562.650656.6265cynara_cardunculusKVH8765481.2573.4375
AMTR_s00002p00026670amborella_trichopodaERN0093560.24151.2048trifolium_pratenseTp57577_TGAC_v2_mRNA600677.519465.8915
AMTR_s00002p00026670amborella_trichopodaERN0093558.433748.7952trifolium_pratenseTp57577_TGAC_v2_mRNA4021275.781263.2812
AMTR_s00002p00026670amborella_trichopodaERN0093559.638652.4096gossypium_raimondiiKJB5876265.131657.2368
AMTR_s00002p00026670amborella_trichopodaERN0093543.373535.5422gossypium_raimondiiKJB2963464.864953.1532
AMTR_s00002p00026670amborella_trichopodaERN0093561.445851.2048arabidopsis_lyratascaffold_704084.180.31566.9291
AMTR_s00002p00026670amborella_trichopodaERN0093562.048247.5904musa_acuminataMa02_p04630.180.468861.7188
AMTR_s00002p00026670amborella_trichopodaERN0093561.445851.2048arabidopsis_hallerig24694.t269.86358.2192
AMTR_s00002p00026670amborella_trichopodaERN0093559.036151.2048corymbia_citriodoracds-KAF7846516.164.052355.5556
AMTR_s00002p00026670amborella_trichopodaERN0093559.036152.4096corymbia_citriodoracds-KAF8022719.179.032370.1613
AMTR_s00002p00026670amborella_trichopodaERN0093563.25354.2169rosa_chinensisPRQ2717182.031270.3125
AMTR_s00002p00026670amborella_trichopodaERN0093562.048253.012brassica_oleraceaBo00578s100.180.468868.75
AMTR_s00002p00026670amborella_trichopodaERN0093563.855453.012dioscorea_rotundataDRNTG_21837.182.812568.75
AMTR_s00002p00026670amborella_trichopodaERN0093563.25353.6145olea_europaeaOE9A093051C382.031269.5312
AMTR_s00002p00026670amborella_trichopodaERN0093562.650653.6145olea_europaeaOE9A023261C181.2569.5312
AMTR_s00002p00026670amborella_trichopodaERN0093561.445852.4096actinidia_chinensisPSR9960879.687567.9688
AMTR_s00002p00026670amborella_trichopodaERN0093559.638651.2048prunus_aviumPav_sc0002080.1_g230.1.mk:CDS:177.952866.9291
AMTR_s00002p00026670amborella_trichopodaERN0093559.036148.7952prunus_aviumPav_sc0001674.1_g040.1.mk:mrna64.900753.6424
AMTR_s00002p00026670amborella_trichopodaERN0093559.036150.6024quercus_subercds-POE84075.177.777866.6667
AMTR_s00002p00026670amborella_trichopodaERN0093548.192839.1566quercus_subercds-POF10079.160.606149.2424
AMTR_s00002p00026670amborella_trichopodaERN0093559.036152.4096quercus_subercds-POF20645.172.058863.9706
AMTR_s00002p00026670amborella_trichopodaERN0093545.783136.747quercus_subercds-POE84076.170.370456.4815
AMTR_s00002p00026670amborella_trichopodaERN0093563.855452.4096nicotiana_attenuataOIT0005282.812567.9688
AMTR_s00002p00026670amborella_trichopodaERN0093559.036149.3976citrus_clementinaESR4838276.562564.0625
AMTR_s00002p00026670amborella_trichopodaERN0093562.048253.012brassica_rapa_ro18A04p016800.1_BraROA.180.468868.75
AMTR_s00002p00026670amborella_trichopodaERN0093559.036152.4096daucus_carotaKZM9878461.2554.375
AMTR_s00002p00026670amborella_trichopodaERN0093532.530120.4819ostreococcus_lucimarinusABO9417147.787630.0885
AMTR_s00002p00026670amborella_trichopodaERN0093562.650654.8193coffea_canephoraCDP0742381.2571.0938
AMTR_s00002p00026670amborella_trichopodaERN0093562.650655.4217pistacia_veracds-EVM0008506.181.2571.875
AMTR_s00002p00026670amborella_trichopodaERN0093562.650654.8193quercus_lobataQL03p018250:mrna81.2571.0938
AMTR_s00002p00026670amborella_trichopodaERN0093562.650655.4217quercus_lobataQL02p011006:mrna81.2571.875
AMTR_s00002p00026670amborella_trichopodaERN0093560.843451.8072camelina_sativaCsa12g081830.179.527667.7165
AMTR_s00002p00026670amborella_trichopodaERN0093565.662753.6145camelina_sativaCsa10g046950.167.28454.9383
AMTR_s00002p00026670amborella_trichopodaERN0093560.843452.4096camelina_sativaCsa11g055640.179.527668.5039
AMTR_s00002p00026670amborella_trichopodaERN0093563.25356.0241vitis_viniferaVitvi18g01082_P00182.031272.6562
AMTR_s00002p00026670amborella_trichopodaERN0093561.445852.4096eutrema_salsugineumESQ4706880.31568.5039
AMTR_s00002p00026670amborella_trichopodaERN009355042.7711corchorus_capsularisOMO8745778.301966.9811
AMTR_s00002p00026670amborella_trichopodaERN0093559.638651.8072corchorus_capsularisOMO9982022.44919.5011
AMTR_s00002p00026670amborella_trichopodaERN0093563.25353.012fraxinus_excelsiorFRAEX38873_v2_000082980.1.cds82.031268.75
AMTR_s00002p00026670amborella_trichopodaERN0093546.385536.1446fraxinus_excelsiorFRAEX38873_v2_000213580.1.cds64.705950.4202
AMTR_s00002p00026670amborella_trichopodaERN0093563.25353.012fraxinus_excelsiorFRAEX38873_v2_000119130.1.cds82.031268.75
AMTR_s00002p00026670amborella_trichopodaERN0093559.638651.8072citrullus_lanatusCla97C05G099860.162.658254.4304

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression