Description

Ensembl ID AMTR_s00001p00193310 Gene ID Accession -
Symbol Alias - Full Name SIN3 associated polypeptide P18
Status Confidence Length 17111 bases Strand Minus strand
Position AmTr_v1.0_scaffold00001 : 3443458 - 3460568 RNA binding domain SAP18
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERM96316 SAP18 PF06487 1.7e-37 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERM96316 480 159aa ERM96316

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00001p00193310

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00001p00193310amborella_trichopodaERM9631683.018978.6164papaver_somniferumRZC7309984.615480.1282
AMTR_s00001p00193310amborella_trichopodaERM9631683.018978.6164papaver_somniferumRZC5761585.161380.6452
AMTR_s00001p00193310amborella_trichopodaERM9631678.616467.2956marchantia_polymorphaPTQ3376878.616467.2956
AMTR_s00001p00193310amborella_trichopodaERM9631685.534679.8742cannabis_sativa_femalecds.novel_model_5044_5bd9a17a79.069873.8372
AMTR_s00001p00193310amborella_trichopodaERM9631681.132176.1006ficus_caricaFCD_00006802-RA:cds74.137969.5402
AMTR_s00001p00193310amborella_trichopodaERM9631672.95666.6667beta_vulgarisKMT0016079.452172.6027
AMTR_s00001p00193310amborella_trichopodaERM9631686.792481.761theobroma_cacaoEOX9614190.196184.9673
AMTR_s00001p00193310amborella_trichopodaERM9631665.408855.3459chlamydomonas_reinhardtiiPNW7826763.030353.3333
AMTR_s00001p00193310amborella_trichopodaERM9631676.729669.8113cucumis_meloMELO3C006160.2.182.432475
AMTR_s00001p00193310amborella_trichopodaERM9631679.245369.8113arabidopsis_thalianaAT2G45640.182.894773.0263
AMTR_s00001p00193310amborella_trichopodaERM9631677.987472.327populus_trichocarpaPotri.002G151500.1.v4.182.119276.1589
AMTR_s00001p00193310amborella_trichopodaERM9631669.811361.6352populus_trichocarpaPotri.014G074000.2.v4.182.835873.1343
AMTR_s00001p00193310amborella_trichopodaERM9631676.100669.1824cucumis_sativusKGN5656981.756874.3243
AMTR_s00001p00193310amborella_trichopodaERM9631662.893151.5723brassica_junceacds.BjuA03g36650S78.12564.0625
AMTR_s00001p00193310amborella_trichopodaERM9631681.76173.5849brassica_junceacds.BjuB06g53660S86.092777.4834
AMTR_s00001p00193310amborella_trichopodaERM9631681.76174.2138brassica_junceacds.BjuA05g04750S84.967377.1242
AMTR_s00001p00193310amborella_trichopodaERM9631681.76174.2138brassica_napusCDY1891385.526377.6316
AMTR_s00001p00193310amborella_trichopodaERM9631639.622632.0755brassica_napusCDY6068478.7563.75
AMTR_s00001p00193310amborella_trichopodaERM9631681.76174.2138brassica_napusCDX7475384.967377.1242
AMTR_s00001p00193310amborella_trichopodaERM9631676.729671.6981prunus_persicaONI2278182.432477.027
AMTR_s00001p00193310amborella_trichopodaERM9631683.647877.9874cajanus_cajanC.cajan_20590.t88.079582.1192
AMTR_s00001p00193310amborella_trichopodaERM9631674.213868.5535malus_domestica_goldenmRNA:MD02G016950084.892178.4173
AMTR_s00001p00193310amborella_trichopodaERM9631638.993735.2201glycine_maxKRH4830686.111177.7778
AMTR_s00001p00193310amborella_trichopodaERM9631683.018977.9874glycine_maxKRH6519787.417282.1192
AMTR_s00001p00193310amborella_trichopodaERM9631677.358572.327prunus_dulcisVVA1936883.108177.7027
AMTR_s00001p00193310amborella_trichopodaERM9631681.76177.3585medicago_truncatulaKEH1901486.092781.457
AMTR_s00001p00193310amborella_trichopodaERM9631681.76176.1006lupinus_angustifoliusOIW2191378.787973.3333
AMTR_s00001p00193310amborella_trichopodaERM9631677.358566.6667physcomitrium_patensPp3c14_24540V3.177.848167.0886
AMTR_s00001p00193310amborella_trichopodaERM9631683.647877.9874phaseolus_vulgarisESW0692588.079582.1192
AMTR_s00001p00193310amborella_trichopodaERM9631683.018976.7296pisum_sativumPsat4g150640.1.cds87.417280.7947
AMTR_s00001p00193310amborella_trichopodaERM9631683.018978.6164vigna_unguiculataVigun10g117100.1.v1.287.417282.7815
AMTR_s00001p00193310amborella_trichopodaERM9631681.132174.2138manihot_esculentaOAY6238187.755180.2721
AMTR_s00001p00193310amborella_trichopodaERM9631681.132175.4717manihot_esculentaOAY4926587.755181.6327
AMTR_s00001p00193310amborella_trichopodaERM9631678.616471.6981solanum_lycopersicumSolyc05g047690.3.180.128273.0769
AMTR_s00001p00193310amborella_trichopodaERM9631647.169843.3962capsicum_annuumPHT8739774.257468.3168
AMTR_s00001p00193310amborella_trichopodaERM9631679.245372.956capsicum_annuumPHT8171480.254873.8854
AMTR_s00001p00193310amborella_trichopodaERM9631655.345951.5723vigna_radiataVradi0194s00110.190.721684.5361
AMTR_s00001p00193310amborella_trichopodaERM9631679.874276.1006sesamum_indicumSIN_1011566.t80.891777.0701
AMTR_s00001p00193310amborella_trichopodaERM9631678.616475.4717lactuca_sativacds-PLY68673.177.639874.5342
AMTR_s00001p00193310amborella_trichopodaERM9631678.616476.1006lactuca_sativacds-PLY88581.178.12575.625
AMTR_s00001p00193310amborella_trichopodaERM9631676.729672.327helianthus_annuusmRNA:HanXRQr2_Chr04g018442177.215272.7848
AMTR_s00001p00193310amborella_trichopodaERM9631677.358574.2138helianthus_annuusmRNA:HanXRQr2_Chr06g024511177.848174.6835
AMTR_s00001p00193310amborella_trichopodaERM9631677.358571.0692avena_sativa_ot3098cds.AVESA.00001b.r3.6Cg0001436.156.68252.0737
AMTR_s00001p00193310amborella_trichopodaERM9631677.358571.6981avena_sativa_ot3098cds.AVESA.00001b.r3.2Dg0000642.18276
AMTR_s00001p00193310amborella_trichopodaERM9631677.358571.6981avena_sativa_ot3098cds.AVESA.00001b.r3.1Ag0002513.158.851754.5455
AMTR_s00001p00193310amborella_trichopodaERM9631676.100668.5535oryza_longistaminataKN539291.1_FGP01165.405458.9189
AMTR_s00001p00193310amborella_trichopodaERM9631677.358571.0692avena_sativa_sangAVESA.00010b.r2.6CG1119840.1.CDS8275.3333
AMTR_s00001p00193310amborella_trichopodaERM9631664.779959.1195avena_sativa_sangAVESA.00010b.r2.2DG0390580.1.CDS81.74674.6032
AMTR_s00001p00193310amborella_trichopodaERM9631678.616471.6981solanum_tuberosumPGSC0003DMT40003560880.128273.0769
AMTR_s00001p00193310amborella_trichopodaERM9631678.616472.327oryza_rufipogonORUFI02G01680.182.236875.6579
AMTR_s00001p00193310amborella_trichopodaERM9631679.245371.6981oryza_brachyanthaOB02G11570.182.894775
AMTR_s00001p00193310amborella_trichopodaERM9631678.616472.327oryza_glaberrimaORGLA02G0015600.182.236875.6579
AMTR_s00001p00193310amborella_trichopodaERM9631677.987471.6981oryza_punctataOPUNC02G01160.181.578975
AMTR_s00001p00193310amborella_trichopodaERM9631678.616469.8113setaria_italicaKQL2897982.236873.0263
AMTR_s00001p00193310amborella_trichopodaERM9631678.616469.8113setaria_viridisTKW3832382.236873.0263
AMTR_s00001p00193310amborella_trichopodaERM9631678.616469.8113sorghum_bicolorEES0619482.236873.0263
AMTR_s00001p00193310amborella_trichopodaERM9631678.616470.4403triticum_turgidumTRITD6Av1G015780.183.333374.6667
AMTR_s00001p00193310amborella_trichopodaERM9631679.245369.8113triticum_turgidumTRITD6Bv1G022530.18474
AMTR_s00001p00193310amborella_trichopodaERM9631677.987469.1824secale_cerealeSECCEUnv1G0528170.184.353774.8299
AMTR_s00001p00193310amborella_trichopodaERM9631679.245369.8113triticum_aestivumTraesCS6B02G090300.182.894773.0263
AMTR_s00001p00193310amborella_trichopodaERM9631678.616470.4403triticum_aestivumTraesCSU02G117100.183.333374.6667
AMTR_s00001p00193310amborella_trichopodaERM9631678.616470.4403triticum_aestivumTraesCS6A02G067100.183.333374.6667
AMTR_s00001p00193310amborella_trichopodaERM9631678.616469.8113zea_maysZm00001eb230470_P00482.236873.0263
AMTR_s00001p00193310amborella_trichopodaERM9631676.729666.0377zea_maysZm00001eb208420_P00269.714360
AMTR_s00001p00193310amborella_trichopodaERM9631648.427741.5094zea_maysZm00001eb230390_P00128.624524.5353
AMTR_s00001p00193310amborella_trichopodaERM9631679.874275.4717ananas_comosusAco019520.1.mrna169.021765.2174
AMTR_s00001p00193310amborella_trichopodaERM9631682.389977.9874ananas_comosusAco025588.1.mrna185.620981.0458
AMTR_s00001p00193310amborella_trichopodaERM9631650.314535.2201caenorhabditis_elegansC16C10.4.148.192833.7349
AMTR_s00001p00193310amborella_trichopodaERM9631654.71735.8491drosophila_melanogasterFBpp03125055838
AMTR_s00001p00193310amborella_trichopodaERM9631657.861645.283homo_sapiensENSP0000037197353.488441.8605
AMTR_s00001p00193310amborella_trichopodaERM9631674.213865.4088chenopodium_quinoaAUR62033386-RA:cds63.440955.914
AMTR_s00001p00193310amborella_trichopodaERM9631668.553561.0063chenopodium_quinoaAUR62004271-RA:cds74.149765.9864
AMTR_s00001p00193310amborella_trichopodaERM9631667.295658.4906chara_brauniiGBG6957184.920673.8095
AMTR_s00001p00193310amborella_trichopodaERM9631644.654142.7673corylus_avellanaCav07g17400.t177.173973.913
AMTR_s00001p00193310amborella_trichopodaERM9631677.987471.0692brachypodium_distachyonKQJ9300282.119274.8344
AMTR_s00001p00193310amborella_trichopodaERM9631676.100668.5535oryza_glumipatulaOGLUM02G01560.165.405458.9189
AMTR_s00001p00193310amborella_trichopodaERM9631677.987471.6981oryza_meridionalisOMERI02G01000.255.855951.3514
AMTR_s00001p00193310amborella_trichopodaERM9631677.987470.4403ipomoea_trilobaitb11g00640.t163.917557.732
AMTR_s00001p00193310amborella_trichopodaERM9631684.276779.8742kalanchoe_fedtschenkoiKaladp0101s0096.1.v1.187.581783.0065
AMTR_s00001p00193310amborella_trichopodaERM9631684.276778.6164kalanchoe_fedtschenkoiKaladp0050s0205.1.v1.187.581781.6993
AMTR_s00001p00193310amborella_trichopodaERM9631678.616470.4403triticum_urartuTuG1812G0600000699.01.T0269.832462.5698
AMTR_s00001p00193310amborella_trichopodaERM9631637.735834.5912triticum_urartuTuG1812G0700003488.01.T0138.216635.0318
AMTR_s00001p00193310amborella_trichopodaERM9631687.421481.761eucalyptus_grandisKCW7288957.43853.719
AMTR_s00001p00193310amborella_trichopodaERM9631673.584970.4403cynara_cardunculusKVH8916079.591876.1905
AMTR_s00001p00193310amborella_trichopodaERM9631671.069266.0377trifolium_pratenseTp57577_TGAC_v2_mRNA1518356.552.5
AMTR_s00001p00193310amborella_trichopodaERM9631686.163581.1321gossypium_raimondiiKJB4116985.093280.1242
AMTR_s00001p00193310amborella_trichopodaERM9631681.132171.0692arabidopsis_lyratascaffold_403510.185.430574.8344
AMTR_s00001p00193310amborella_trichopodaERM9631677.987469.8113hordeum_vulgareHORVU.MOREX.r3.6HG0549040.182.666774
AMTR_s00001p00193310amborella_trichopodaERM9631678.616472.327oryza_barthiiOBART02G01700.182.236875.6579
AMTR_s00001p00193310amborella_trichopodaERM9631667.924559.1195asparagus_officinalisONK7989442.687737.1542
AMTR_s00001p00193310amborella_trichopodaERM9631685.534678.6164musa_acuminataMa03_p12300.189.473782.2368
AMTR_s00001p00193310amborella_trichopodaERM9631678.616469.8113arabidopsis_hallerig09778.t182.781573.5099
AMTR_s00001p00193310amborella_trichopodaERM9631679.245370.4403eragrostis_tefEt_1A_007953.CDS83.443774.1722
AMTR_s00001p00193310amborella_trichopodaERM9631679.245370.4403eragrostis_tefEt_1B_012751.CDS83.443774.1722
AMTR_s00001p00193310amborella_trichopodaERM9631685.534681.1321corymbia_citriodoracds-KAF8028432.186.07681.6456
AMTR_s00001p00193310amborella_trichopodaERM9631676.729670.4403rosa_chinensisPRQ5774186.524879.4326
AMTR_s00001p00193310amborella_trichopodaERM9631683.647877.9874juglans_regiacds.Jr07_32740_p186.363680.5195
AMTR_s00001p00193310amborella_trichopodaERM9631683.647877.9874juglans_regiacds.Jr07_32750_p186.363680.5195
AMTR_s00001p00193310amborella_trichopodaERM9631667.924560.3774juglans_regiacds.Jr07_32760_p182.442773.2824
AMTR_s00001p00193310amborella_trichopodaERM9631678.616469.8113saccharum_spontaneumSspon.04G0019980-3C-mRNA-1:cds82.236873.0263
AMTR_s00001p00193310amborella_trichopodaERM9631679.245369.1824triticum_dicoccoidesTRIDC6BG012230.171.590962.5
AMTR_s00001p00193310amborella_trichopodaERM9631638.364835.2201triticum_dicoccoidesTRIDC3AG066360.172.61966.6667
AMTR_s00001p00193310amborella_trichopodaERM9631639.622636.478triticum_dicoccoidesTRIDC7AG044510.268.478363.0435
AMTR_s00001p00193310amborella_trichopodaERM9631678.616470.4403triticum_dicoccoidesTRIDC6AG008180.277.639869.5652
AMTR_s00001p00193310amborella_trichopodaERM9631638.364835.2201triticum_dicoccoidesTRIDC3AG021010.172.61966.6667
AMTR_s00001p00193310amborella_trichopodaERM9631681.76174.2138brassica_oleraceaBo4g024830.185.526377.6316
AMTR_s00001p00193310amborella_trichopodaERM9631639.622632.0755brassica_oleraceaBo3g038850.178.7563.75
AMTR_s00001p00193310amborella_trichopodaERM9631678.616472.327oryza_indicaBGIOSGA007222-PA82.236875.6579
AMTR_s00001p00193310amborella_trichopodaERM9631655.345942.7673ciona_savignyiENSCSAVP0000000526556.410343.5897
AMTR_s00001p00193310amborella_trichopodaERM9631689.308282.3899dioscorea_rotundataDRNTG_32895.192.810585.6209
AMTR_s00001p00193310amborella_trichopodaERM9631674.842866.0377leersia_perrieriLPERR02G01500.177.272768.1818
AMTR_s00001p00193310amborella_trichopodaERM9631679.245374.2138olea_europaeaOE9A117825C180.254875.1592
AMTR_s00001p00193310amborella_trichopodaERM9631681.132176.7296olea_europaeaOE9A046431C182.165677.707
AMTR_s00001p00193310amborella_trichopodaERM9631679.245374.2138olea_europaeaOE9A047133C180.254875.1592
AMTR_s00001p00193310amborella_trichopodaERM9631679.245376.7296actinidia_chinensisPSS2419879.746877.2152
AMTR_s00001p00193310amborella_trichopodaERM9631679.245376.7296actinidia_chinensisPSS1398979.746877.2152
AMTR_s00001p00193310amborella_trichopodaERM9631678.616473.5849prunus_aviumPav_sc0000072.1_g660.1.mk:mrna83.333378
AMTR_s00001p00193310amborella_trichopodaERM9631682.389977.9874quercus_subercds-POE90816.186.75582.1192
AMTR_s00001p00193310amborella_trichopodaERM9631679.245372.956nicotiana_attenuataOIS9571380.769274.359
AMTR_s00001p00193310amborella_trichopodaERM9631684.905779.2453citrus_clementinaESR5844286.538580.7692
AMTR_s00001p00193310amborella_trichopodaERM9631681.76174.2138brassica_rapa_ro18A05p006910.1_BraROA.184.415676.6234
AMTR_s00001p00193310amborella_trichopodaERM9631661.635250.9434brassica_rapa_ro18A03p026050.1_BraROA.177.777864.2857
AMTR_s00001p00193310amborella_trichopodaERM9631666.666761.0063daucus_carotaKZN0605273.103466.8966
AMTR_s00001p00193310amborella_trichopodaERM9631689.308286.7924nymphaea_colorataNC2G0036800.1:cds89.308286.7924
AMTR_s00001p00193310amborella_trichopodaERM9631679.245373.5849coffea_canephoraCDP0891777.300671.7791
AMTR_s00001p00193310amborella_trichopodaERM9631678.616470.4403aegilops_tauschiiAET6Gv20167400.183.333374.6667
AMTR_s00001p00193310amborella_trichopodaERM9631685.534679.8742pistacia_veracds-EVM0003240.189.473783.5526
AMTR_s00001p00193310amborella_trichopodaERM9631665.408856.6038pistacia_veracds-EVM0029137.179.389368.7023
AMTR_s00001p00193310amborella_trichopodaERM9631678.616469.8113digitaria_exilisDexi1A01G0001860.1:cds82.781573.5099
AMTR_s00001p00193310amborella_trichopodaERM9631678.616469.8113digitaria_exilisDexi1B01G0001820.1:cds82.781573.5099
AMTR_s00001p00193310amborella_trichopodaERM9631678.616472.327oryza_sativaOs02t0122000-0182.236875.6579
AMTR_s00001p00193310amborella_trichopodaERM9631678.616469.8113panicum_halliiPUZ7379182.236873.0263
AMTR_s00001p00193310amborella_trichopodaERM9631681.76177.3585quercus_lobataQL08p051220:mrna86.092781.457
AMTR_s00001p00193310amborella_trichopodaERM9631679.245369.8113eragrostis_curvulaTVU3360863.959456.3452
AMTR_s00001p00193310amborella_trichopodaERM9631681.132171.6981camelina_sativaCsa04g063670.185.430575.4967
AMTR_s00001p00193310amborella_trichopodaERM9631681.132172.327camelina_sativaCsa06g052040.185.430576.1589
AMTR_s00001p00193310amborella_trichopodaERM9631681.132171.6981camelina_sativaCsa05g003650.185.430575.4967
AMTR_s00001p00193310amborella_trichopodaERM9631672.32765.4088selaginella_moellendorffiiEFJ1554477.702770.2703
AMTR_s00001p00193310amborella_trichopodaERM9631672.95666.0377selaginella_moellendorffiiEFJ1126478.378470.9459
AMTR_s00001p00193310amborella_trichopodaERM9631681.132172.956eutrema_salsugineumESQ3919585.430576.8212
AMTR_s00001p00193310amborella_trichopodaERM9631678.616469.1824echinochloa_crusgalliscaffold48.556.cds82.236872.3684
AMTR_s00001p00193310amborella_trichopodaERM9631679.245368.5535echinochloa_crusgalliscaffold200.21.cds83.443772.1854
AMTR_s00001p00193310amborella_trichopodaERM9631679.245369.1824echinochloa_crusgalliscaffold98.95.cds28.12524.5536
AMTR_s00001p00193310amborella_trichopodaERM9631684.905779.2453corchorus_capsularisOMO7871188.235382.3529
AMTR_s00001p00193310amborella_trichopodaERM9631679.245372.327fraxinus_excelsiorFRAEX38873_v2_000054410.1.cds80.254873.2484
AMTR_s00001p00193310amborella_trichopodaERM9631676.729669.8113citrullus_lanatusCla97C05G082440.172.189365.6805
AMTR_s00001p00193310amborella_trichopodaERM9631678.616472.327oryza_nivaraONIVA02G01600.182.236875.6579

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression