Description

Ensembl ID AMTR_s00001p00028400 Gene ID Accession -
Symbol Alias - Full Name Polynucleotide adenylyltransferase family protein
Status Confidence Length 16794 bases Strand Plus strand
Position AmTr_v1.0_scaffold00001 : 181591 - 198384 RNA binding domain PolyA_pol
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ERM96135 PolyA_pol PF01743 4.1e-27 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ERM96135 1587 528aa ERM96135

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00001p00028400amborella_trichopodaERN0617860.038641.8919amborella_trichopodaERM9613558.901541.0985
AMTR_s00001p00028400amborella_trichopodaERN0854831.818216.2879amborella_trichopodaERM9613531.818216.2879

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AMTR_s00001p00028400amborella_trichopodaERM9613526.893914.0152chondrus_crispusCDF3914626.843113.9887
AMTR_s00001p00028400amborella_trichopodaERM9613545.833333.3333papaver_somniferumRZC6737140.947529.78
AMTR_s00001p00028400amborella_trichopodaERM9613550.568230.8712marchantia_polymorphaPTQ2971247.173128.7986
AMTR_s00001p00028400amborella_trichopodaERM9613550.568230.8712marchantia_polymorphaPTQ2815847.173128.7986
AMTR_s00001p00028400amborella_trichopodaERM9613549.05335.7955cannabis_sativa_femalecds.evm.model.01.1337.920927.672
AMTR_s00001p00028400amborella_trichopodaERM9613565.530347.5379ficus_caricaFCD_00010521-RA:cds38.147727.6736
AMTR_s00001p00028400amborella_trichopodaERM9613562.878844.8864beta_vulgarisKMT0962243.626831.1432
AMTR_s00001p00028400amborella_trichopodaERM9613566.098548.8636theobroma_cacaoEOX9068148.879636.1345
AMTR_s00001p00028400amborella_trichopodaERM9613534.280320.0758chlamydomonas_reinhardtiiPNW7327618.952911.0995
AMTR_s00001p00028400amborella_trichopodaERM9613563.257646.9697cucumis_meloMELO3C013730.2.147.578335.3276
AMTR_s00001p00028400amborella_trichopodaERM9613562.689443.1818arabidopsis_thalianaAT2G17580.143.725230.1189
AMTR_s00001p00028400amborella_trichopodaERM9613564.204545.4545populus_trichocarpaPotri.005G100100.1.v4.139.976428.3019
AMTR_s00001p00028400amborella_trichopodaERM9613563.068245.8333cucumis_sativusKGN5561442.258930.7107
AMTR_s00001p00028400amborella_trichopodaERM9613560.984841.2879brassica_junceacds.BjuA06g13420S43.221529.2617
AMTR_s00001p00028400amborella_trichopodaERM9613561.363641.6667brassica_junceacds.BjuB02g11560S44.444430.1783
AMTR_s00001p00028400amborella_trichopodaERM9613560.606140.7197brassica_napusCDY2918343.895729.4925
AMTR_s00001p00028400amborella_trichopodaERM9613561.174241.4773brassica_napusCDY5436544.125729.918
AMTR_s00001p00028400amborella_trichopodaERM9613567.992450.3788prunus_persicaONH9727148.843536.1905
AMTR_s00001p00028400amborella_trichopodaERM9613557.954541.4773cajanus_cajanC.cajan_12479.t45.739932.7354
AMTR_s00001p00028400amborella_trichopodaERM9613564.962146.4015malus_domestica_goldenmRNA:MD02G010100048.174234.4101
AMTR_s00001p00028400amborella_trichopodaERM9613563.636446.0227malus_domestica_goldenmRNA:MD15G02047005036.1607
AMTR_s00001p00028400amborella_trichopodaERM9613550.568234.8485glycine_maxKRH2890248.021633.0935
AMTR_s00001p00028400amborella_trichopodaERM9613561.55343.1818glycine_maxKRH7655045.518231.9328
AMTR_s00001p00028400amborella_trichopodaERM9613567.992450.3788prunus_dulcisVVA1002848.843536.1905
AMTR_s00001p00028400amborella_trichopodaERM9613562.310642.4242medicago_truncatulaAES9528246.143131.4165
AMTR_s00001p00028400amborella_trichopodaERM9613563.44743.9394lupinus_angustifoliusOIV9488246.398932.133
AMTR_s00001p00028400amborella_trichopodaERM9613549.431831.25physcomitrium_patensPp3c14_11850V3.447.454530
AMTR_s00001p00028400amborella_trichopodaERM9613561.174242.803phaseolus_vulgarisESW2998344.246630.9589
AMTR_s00001p00028400amborella_trichopodaERM9613562.121243.3712pisum_sativumPsat2g149440.1.cds46.262332.299
AMTR_s00001p00028400amborella_trichopodaERM9613560.984842.0455vigna_angularisKOM4522743.869230.2452
AMTR_s00001p00028400amborella_trichopodaERM9613560.037941.6667vigna_unguiculataVigun02g114700.1.v1.243.30630.0546
AMTR_s00001p00028400amborella_trichopodaERM9613564.015246.9697manihot_esculentaOAY6097748.563235.6322
AMTR_s00001p00028400amborella_trichopodaERM9613564.015245.4545solanum_lycopersicumSolyc02g082810.3.140.969729.0909
AMTR_s00001p00028400amborella_trichopodaERM9613565.340943.5606solanum_lycopersicumSolyc03g032180.3.144.287529.525
AMTR_s00001p00028400amborella_trichopodaERM9613563.44745.4545capsicum_annuumPHT9107546.079833.0124
AMTR_s00001p00028400amborella_trichopodaERM9613564.015243.3712capsicum_annuumPHT8306645.066730.5333
AMTR_s00001p00028400amborella_trichopodaERM9613560.606142.0455vigna_radiataVradi11g07030.143.835630.411
AMTR_s00001p00028400amborella_trichopodaERM9613560.984841.8561sesamum_indicumSIN_1009450.t47.774532.7893
AMTR_s00001p00028400amborella_trichopodaERM9613563.825845.0758lactuca_sativacds-PLY92776.128.295519.9832
AMTR_s00001p00028400amborella_trichopodaERM9613562.121243.5606helianthus_annuusmRNA:HanXRQr2_Chr07g029406152.063536.5079
AMTR_s00001p00028400amborella_trichopodaERM9613557.007640.5303helianthus_annuusmRNA:HanXRQr2_Chr07g029404142.69530.3546
AMTR_s00001p00028400amborella_trichopodaERM9613560.795542.4242helianthus_annuusmRNA:HanXRQr2_Chr14g064385147.555633.1852
AMTR_s00001p00028400amborella_trichopodaERM9613561.742441.2879avena_sativa_ot3098cds.AVESA.00001b.r3.4Cg0001039.255.536637.138
AMTR_s00001p00028400amborella_trichopodaERM9613561.174240.3409avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0003455.255.882436.8512
AMTR_s00001p00028400amborella_trichopodaERM9613560.984840.3409avena_sativa_ot3098cds.AVESA.00001b.r3.4Ag0002485.152.44334.6906
AMTR_s00001p00028400amborella_trichopodaERM9613546.590931.4394oryza_longistaminataKN539413.1_FGP01057.611238.8759
AMTR_s00001p00028400amborella_trichopodaERM9613560.984840.3409avena_sativa_sangAVESA.00010b.r2.4AG0626890.1.CDS57.913738.3094
AMTR_s00001p00028400amborella_trichopodaERM9613561.742441.2879avena_sativa_sangAVESA.00010b.r2.4CG1273050.1.CDS58.633139.2086
AMTR_s00001p00028400amborella_trichopodaERM9613546.212131.8182avena_sativa_sangAVESA.00010b.r2.1DG0125640.1.CDS58.513240.2878
AMTR_s00001p00028400amborella_trichopodaERM9613555.30337.1212oryza_rufipogonORUFI03G02260.156.26237.7649
AMTR_s00001p00028400amborella_trichopodaERM9613558.901540.9091oryza_brachyanthaOB03G12510.160.388341.9417
AMTR_s00001p00028400amborella_trichopodaERM9613560.416740.7197oryza_glaberrimaORGLA03G0023000.157.168538.5305
AMTR_s00001p00028400amborella_trichopodaERM9613553.409135.4167oryza_punctataOPUNC03G02310.156.287437.3253
AMTR_s00001p00028400amborella_trichopodaERM9613546.401531.6288setaria_italicaKQK9273960.344841.133
AMTR_s00001p00028400amborella_trichopodaERM9613559.848540.1515setaria_viridisTKV9837657.454538.5455
AMTR_s00001p00028400amborella_trichopodaERM9613559.848540.5303sorghum_bicolorOQU9330955.633837.6761
AMTR_s00001p00028400amborella_trichopodaERM9613558.522741.8561triticum_turgidumTRITD5Av1G239820.355.376339.6057
AMTR_s00001p00028400amborella_trichopodaERM9613558.712142.0455secale_cerealeSECCE5Rv1G0367600.155.956740.0722
AMTR_s00001p00028400amborella_trichopodaERM9613558.333341.4773triticum_aestivumTraesCS5A02G498200.155.197139.2473
AMTR_s00001p00028400amborella_trichopodaERM9613559.090941.8561triticum_aestivumTraesCS4B02G326000.155.91439.6057
AMTR_s00001p00028400amborella_trichopodaERM9613558.522741.4773triticum_aestivumTraesCS4D02G322900.155.376339.2473
AMTR_s00001p00028400amborella_trichopodaERM9613559.659140.3409zea_maysZm00001eb002540_P00156.654738.3094
AMTR_s00001p00028400amborella_trichopodaERM9613568.560648.2955ananas_comosusAco011954.1.mrna166.42246.789
AMTR_s00001p00028400amborella_trichopodaERM9613527.083313.6364caenorhabditis_elegansF55B12.4.232.798216.5138
AMTR_s00001p00028400amborella_trichopodaERM9613527.272715.5303drosophila_melanogasterFBpp029078930.188717.1908
AMTR_s00001p00028400amborella_trichopodaERM9613528.030316.4773homo_sapiensENSP0000025160734.101420.0461
AMTR_s00001p00028400amborella_trichopodaERM9613560.606143.9394chenopodium_quinoaAUR62029454-RA:cds40.868529.6296
AMTR_s00001p00028400amborella_trichopodaERM9613562.121246.0227chenopodium_quinoaAUR62003376-RA:cds42.708331.6406
AMTR_s00001p00028400amborella_trichopodaERM9613537.523.6742chara_brauniiGBG8260026.902216.9837
AMTR_s00001p00028400amborella_trichopodaERM9613561.174241.4773arabis_alpinaKFK4225642.167128.5901
AMTR_s00001p00028400amborella_trichopodaERM9613566.287948.1061corylus_avellanaCav02g00940.t140.792529.6037
AMTR_s00001p00028400amborella_trichopodaERM9613560.795542.2348brachypodium_distachyonKQK2381158.04740.3255
AMTR_s00001p00028400amborella_trichopodaERM9613555.492437.5oryza_glumipatulaOGLUM03G02440.155.703437.6426
AMTR_s00001p00028400amborella_trichopodaERM9613554.924236.7424oryza_meridionalisOMERI03G02370.155.984637.4517
AMTR_s00001p00028400amborella_trichopodaERM9613560.416741.6667ipomoea_trilobaitb12g02420.t147.189432.5444
AMTR_s00001p00028400amborella_trichopodaERM9613560.984842.2348kalanchoe_fedtschenkoiKaladp0008s0101.1.v1.128.048819.4251
AMTR_s00001p00028400amborella_trichopodaERM9613558.712141.8561triticum_urartuTuG1812G0500005119.01.T0155.555639.6057
AMTR_s00001p00028400amborella_trichopodaERM9613558.712141.8561triticum_urartuTuG1812S0001670400.01.T0155.555639.6057
AMTR_s00001p00028400amborella_trichopodaERM9613562.878846.4015eucalyptus_grandisKCW5650945.7333.7466
AMTR_s00001p00028400amborella_trichopodaERM9613560.984841.2879cynara_cardunculusKVI0873124.505316.5906
AMTR_s00001p00028400amborella_trichopodaERM9613565.530348.1061gossypium_raimondiiKJB1038549.147736.0795
AMTR_s00001p00028400amborella_trichopodaERM9613561.742442.9924arabidopsis_lyratascaffold_304076.142.838429.8292
AMTR_s00001p00028400amborella_trichopodaERM9613559.469741.8561hordeum_vulgareHORVU.MOREX.r3.4HG0409900.156.474839.7482
AMTR_s00001p00028400amborella_trichopodaERM9613555.113636.9318oryza_barthiiOBART03G02510.156.069437.5723
AMTR_s00001p00028400amborella_trichopodaERM9613546.401534.8485asparagus_officinalisONK5590271.220953.4884
AMTR_s00001p00028400amborella_trichopodaERM9613569.128849.053musa_acuminataMa08_p13930.167.970248.2309
AMTR_s00001p00028400amborella_trichopodaERM9613555.30337.6894eragrostis_tefEt_4B_037119.CDS53.874536.7159
AMTR_s00001p00028400amborella_trichopodaERM9613561.931842.4242eragrostis_tefEt_4A_032944.CDS56.770838.8889
AMTR_s00001p00028400amborella_trichopodaERM9613559.469741.4773eragrostis_tefEt_4B_037120.CDS61.089542.607
AMTR_s00001p00028400amborella_trichopodaERM9613553.219736.553eragrostis_tefEt_4A_032945.CDS42.575829.2424
AMTR_s00001p00028400amborella_trichopodaERM9613564.772747.3485corymbia_citriodoracds-KAF8029152.147.534.7222
AMTR_s00001p00028400amborella_trichopodaERM9613565.909148.4848rosa_chinensisPRQ4722852.330838.4962
AMTR_s00001p00028400amborella_trichopodaERM9613565.909148.4848rosa_chinensisPRQ4723852.330838.4962
AMTR_s00001p00028400amborella_trichopodaERM9613565.909148.4848juglans_regiacds.Jr11_00570_p14835.3103
AMTR_s00001p00028400amborella_trichopodaERM9613556.2538.0682saccharum_spontaneumSspon.01G0034560-2D-mRNA-1:cds48.450232.7896
AMTR_s00001p00028400amborella_trichopodaERM9613556.628840.3409triticum_dicoccoidesTRIDC5AG070870.652.733737.5661
AMTR_s00001p00028400amborella_trichopodaERM9613540.530328.7879triticum_dicoccoidesTRIDC4BG054770.260.112442.6966
AMTR_s00001p00028400amborella_trichopodaERM9613561.174241.0985brassica_oleraceaBo3g093560.144.368129.8077
AMTR_s00001p00028400amborella_trichopodaERM9613560.416740.9091oryza_indicaBGIOSGA011518-PA57.168538.7097
AMTR_s00001p00028400amborella_trichopodaERM9613527.651513.8258ciona_savignyiENSCSAVP0000001276334.597217.2986
AMTR_s00001p00028400amborella_trichopodaERM9613545.833335.6061dioscorea_rotundataDRNTG_29116.168.7553.4091
AMTR_s00001p00028400amborella_trichopodaERM9613556.2538.6364leersia_perrieriLPERR03G02310.157.669939.6117
AMTR_s00001p00028400amborella_trichopodaERM9613564.393944.8864olea_europaeaOE9A039161C144.328630.8996
AMTR_s00001p00028400amborella_trichopodaERM9613535.227325olea_europaeaOE9A097933C164.359945.6747
AMTR_s00001p00028400amborella_trichopodaERM9613566.287948.8636actinidia_chinensisPSS2995547.61935.102
AMTR_s00001p00028400amborella_trichopodaERM9613567.424249.8106prunus_aviumPav_sc0000414.1_g170.1.mk:mrna48.435435.7823
AMTR_s00001p00028400amborella_trichopodaERM9613566.477348.8636quercus_subercds-POE45398.147.368434.8178
AMTR_s00001p00028400amborella_trichopodaERM9613564.962144.5076nicotiana_attenuataOIT2171845.855631.4171
AMTR_s00001p00028400amborella_trichopodaERM9613565.340946.2121citrus_clementinaESR3854150.072635.4136
AMTR_s00001p00028400amborella_trichopodaERM9613560.984841.0985brassica_rapa_ro18A06p041430.1_BraROA.143.163529.0885
AMTR_s00001p00028400amborella_trichopodaERM9613562.878844.8864nymphaea_colorataNC2G0036360.1:cds56.752140.5128
AMTR_s00001p00028400amborella_trichopodaERM9613538.825823.1061ostreococcus_lucimarinusABP0044833.442119.9021
AMTR_s00001p00028400amborella_trichopodaERM9613557.19740.3409coffea_canephoraCDP0180566.373646.8132
AMTR_s00001p00028400amborella_trichopodaERM9613558.712141.6667aegilops_tauschiiAET4Gv20771600.155.555639.4265
AMTR_s00001p00028400amborella_trichopodaERM9613563.636444.5076pistacia_veracds-EVM0028901.137.458226.1984
AMTR_s00001p00028400amborella_trichopodaERM9613549.05335.9848digitaria_exilisDexi9B01G0047460.1:cds50.884137.3281
AMTR_s00001p00028400amborella_trichopodaERM9613550.757635.9848digitaria_exilisDexi9A01G0048050.1:cds56.900240.3397
AMTR_s00001p00028400amborella_trichopodaERM9613560.606140.7197oryza_sativaOs03t0131400-0157.347738.5305
AMTR_s00001p00028400amborella_trichopodaERM9613559.280339.3939panicum_halliiPUZ4299658.070538.59
AMTR_s00001p00028400amborella_trichopodaERM9613566.666748.6742quercus_lobataQL06p053768:mrna45.244233.0334
AMTR_s00001p00028400amborella_trichopodaERM9613566.477348.2955quercus_lobataQL06p052810:mrna45.115732.7763
AMTR_s00001p00028400amborella_trichopodaERM9613561.742442.6136eragrostis_curvulaTVU4849928.055119.3632
AMTR_s00001p00028400amborella_trichopodaERM9613525.94717.9924camelina_sativaCsa19g054460.130.444421.1111
AMTR_s00001p00028400amborella_trichopodaERM9613549.05327.8409camelina_sativaCsa15g005080.133.72419.1406
AMTR_s00001p00028400amborella_trichopodaERM9613529.734822.5379camelina_sativaCsa01g032140.156.272442.6523
AMTR_s00001p00028400amborella_trichopodaERM9613562.310642.6136camelina_sativaCsa15g075880.143.006529.4118
AMTR_s00001p00028400amborella_trichopodaERM9613564.393946.9697vitis_viniferaVitvi04g04444_P00146.384733.8336
AMTR_s00001p00028400amborella_trichopodaERM9613561.55342.2348eutrema_salsugineumESQ5073442.428229.1123
AMTR_s00001p00028400amborella_trichopodaERM9613560.037940.9091echinochloa_crusgalliscaffold52.174.cds59.141840.2985
AMTR_s00001p00028400amborella_trichopodaERM9613560.227341.4773echinochloa_crusgalliscaffold104.103.cds54.452137.5
AMTR_s00001p00028400amborella_trichopodaERM9613563.825845.0758fraxinus_excelsiorFRAEX38873_v2_000335030.1.cds46.675932.964
AMTR_s00001p00028400amborella_trichopodaERM9613563.068247.5379citrullus_lanatusCla97C10G184860.148.82736.8035
AMTR_s00001p00028400amborella_trichopodaERM9613555.113637.1212oryza_nivaraONIVA03G02130.156.069437.7649

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression