RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	AET5Gv20515900	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	4779 bases	Strand	Minus strand
Position	5D : 333853795 - 333858573	RNA binding domain	PheRS_DBD3 , tRNA-synt_2d
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
AET5Gv20515900	PheRS_DBD3	PF18553	3.5e-13	1
AET5Gv20515900	PheRS_DBD3	PF18553	3.5e-13	2
AET5Gv20515900	PheRS_DBD3	PF18553	4.5e-13	3
AET5Gv20515900	PheRS_DBD3	PF18553	6e-13	4
AET5Gv20515900	PheRS_DBD3	PF18553	6.3e-13	5
AET5Gv20515900	PheRS_DBD3	PF18553	6.8e-13	6
AET5Gv20515900	PheRS_DBD3	PF18553	7.2e-13	7
AET5Gv20515900	PheRS_DBD3	PF18553	1.4e-12	8
AET5Gv20515900	PheRS_DBD3	PF18553	1.5e-12	9
AET5Gv20515900	PheRS_DBD3	PF18553	1.5e-12	10
AET5Gv20515900	PheRS_DBD3	PF18553	1.6e-12	11
AET5Gv20515900	tRNA-synt_2d	PF01409	1e-89	12
AET5Gv20515900	tRNA-synt_2d	PF01409	2.3e-89	13
AET5Gv20515900	tRNA-synt_2d	PF01409	2.3e-89	14
AET5Gv20515900	tRNA-synt_2d	PF01409	1.1e-88	15
AET5Gv20515900	tRNA-synt_2d	PF01409	1.5e-88	16
AET5Gv20515900	tRNA-synt_2d	PF01409	1e-86	17
AET5Gv20515900	tRNA-synt_2d	PF01409	9.5e-83	18
AET5Gv20515900	tRNA-synt_2d	PF01409	7.2e-82	19
AET5Gv20515900	tRNA-synt_2d	PF01409	3.7e-62	20
AET5Gv20515900	tRNA-synt_2d	PF01409	3.1e-51	21
AET5Gv20515900	tRNA-synt_2d	PF01409	6.6e-42	22
AET5Gv20515900	tRNA-synt_2d	PF01409	4e-27	23
AET5Gv20515900	tRNA-synt_2d	PF01409	7.8e-20	24
AET5Gv20515900	tRNA-synt_2d	PF01409	1.2e-19	25
AET5Gv20515900	tRNA-synt_2d	PF01409	3.6e-19	26
AET5Gv20515900	tRNA-synt_2d	PF01409	3.6e-19	27

Showing 1 to 27 of 27 entries

Pubmed ID	Full Name	Cell	Author	Time	Doi
No data available in table

Pubmed ID	Title	Author	Time	Journal
No data available in table

Transcripts

Show entries

Search:

Name	Transcript ID	bp	Protein	Translation ID
-	AET5Gv20515900.9	1153	257aa	AET5Gv20515900
-	AET5Gv20515900.1	1154	226aa	AET5Gv20515900
-	AET5Gv20515900.5	1618	362aa	AET5Gv20515900
-	AET5Gv20515900.8	1616	415aa	AET5Gv20515900
-	AET5Gv20515900.12	1497	498aa	AET5Gv20515900
-	AET5Gv20515900.15	1128	375aa	AET5Gv20515900
-	AET5Gv20515900.2	956	268aa	AET5Gv20515900
-	AET5Gv20515900.11	1449	255aa	AET5Gv20515900
-	AET5Gv20515900.4	1893	393aa	AET5Gv20515900
-	AET5Gv20515900.3	1682	362aa	AET5Gv20515900

Showing 1 to 10 of 16 entries

Previous1 2Next

Gene Model

Click here to download AET5Gv20515900's gene model file

ensgID	Trait	pValue	Pubmed ID
No data available in table

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID
No data available in table

Protein-Protein Interaction (PPI)

Click here to download AET5Gv20515900's PPI file

Paralogs

Show entries

Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AET5Gv20515900	aegilops_tauschii	AET6Gv20792200.6	77.8646	72.9167	aegilops_tauschii	AET5Gv20515900.13	58.2846	54.5809
AET5Gv20515900	aegilops_tauschii	AET5Gv20261900.3	30	16.875	aegilops_tauschii	AET5Gv20515900.13	28.0702	15.7895
AET5Gv20515900	aegilops_tauschii	AET5Gv20600200.6	12.5786	7.07547	aegilops_tauschii	AET5Gv20515900.13	15.5945	8.77193
AET5Gv20515900	aegilops_tauschii	AET5Gv20600100.1	27.3128	15.4185	aegilops_tauschii	AET5Gv20515900.13	12.0858	6.82261

Showing 1 to 4 of 4 entries

Previous1Next

Orthologs

Show entries

Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AET5Gv20515900	aegilops_tauschii	AET5Gv20515900.13	61.7934	48.538	chondrus_crispus	CDF39558	62.279	48.9194
AET5Gv20515900	aegilops_tauschii	AET5Gv20515900.13	66.2768	54.386	chlamydomonas_reinhardtii	PNW78766	68.1363	55.9118
AET5Gv20515900	aegilops_tauschii	AET5Gv20515900.13	71.1501	60.8187	physcomitrium_patens	Pp3c2_16770V3.4	74.3381	63.5438
AET5Gv20515900	aegilops_tauschii	AET5Gv20515900.13	62.1832	49.5127	papaver_somniferum	RZC53430	32.9205	26.2126
AET5Gv20515900	aegilops_tauschii	AET5Gv20515900.13	71.345	58.6745	papaver_somniferum	RZC59651	74.6939	61.4286
AET5Gv20515900	aegilops_tauschii	AET5Gv20515900.13	33.9181	30.9942	papaver_somniferum	RZC49110	82.8571	75.7143
AET5Gv20515900	aegilops_tauschii	AET5Gv20515900.13	52.6316	40.1559	papaver_somniferum	RZC63801	69.2308	52.8205
AET5Gv20515900	aegilops_tauschii	AET5Gv20515900.13	43.6647	33.9181	ficus_carica	FCD_00027598-RA:cds	57.5835	44.7301
AET5Gv20515900	aegilops_tauschii	AET5Gv20515900.13	57.8947	49.3177	ficus_carica	FCD_00033789-RA:cds	81.1475	69.1257
AET5Gv20515900	aegilops_tauschii	AET5Gv20515900.13	74.6589	62.5731	beta_vulgaris	KMT16698	78.4836	65.7787

Showing 1 to 10 of 209 entries

Previous1 2 3 4 5…21Next

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression