RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	AET3Gv20780800	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	166944 bases	Strand	Plus strand
Position	3D : 459524233 - 459691176	RNA binding domain	Ribosomal_S26e
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
AET3Gv20780800	Ribosomal_S26e	PF01283	2.3e-37	1
AET3Gv20780800	Ribosomal_S26e	PF01283	2.4e-37	2
AET3Gv20780800	Ribosomal_S26e	PF01283	2.4e-37	3
AET3Gv20780800	Ribosomal_S26e	PF01283	2.5e-37	4
AET3Gv20780800	Ribosomal_S26e	PF01283	5.2e-34	5
AET3Gv20780800	Ribosomal_S26e	PF01283	1.8e-33	6
AET3Gv20780800	Ribosomal_S26e	PF01283	5.5e-31	7
AET3Gv20780800	Ribosomal_S26e	PF01283	1.4e-30	8

Showing 1 to 8 of 8 entries

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
-	AET3Gv20780800.4	325	108aa	AET3Gv20780800
-	AET3Gv20780800.6	387	128aa	AET3Gv20780800
-	AET3Gv20780800.1	892	190aa	AET3Gv20780800
-	AET3Gv20780800.9	486	40aa	AET3Gv20780800
-	AET3Gv20780800.3	261	87aa	AET3Gv20780800
-	AET3Gv20780800.2	891	190aa	AET3Gv20780800
-	AET3Gv20780800.8	888	189aa	AET3Gv20780800
-	AET3Gv20780800.5	366	121aa	AET3Gv20780800
-	AET3Gv20780800.7	317	105aa	AET3Gv20780800

Showing 1 to 9 of 9 entries

Gene Model

Click here to download AET3Gv20780800's gene model file

Protein-Protein Interaction (PPI)

Click here to download AET3Gv20780800's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AET3Gv20780800	aegilops_tauschii	AET3Gv20780700.1	76.9697	63.0303	aegilops_tauschii	AET3Gv20780800.1	66.8421	54.7368
AET3Gv20780800	aegilops_tauschii	AET5Gv21088700.1	57.5581	50	aegilops_tauschii	AET3Gv20780800.1	52.1053	45.2632

Showing 1 to 2 of 2 entries

Orthologs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AET3Gv20780800	aegilops_tauschii	AET3Gv20780800.1	37.8947	30	chondrus_crispus	CDF33460	58.0645	45.9677
AET3Gv20780800	aegilops_tauschii	AET3Gv20780800.1	36.8421	28.9474	chlamydomonas_reinhardtii	PNW72105	62.5	49.1071
AET3Gv20780800	aegilops_tauschii	AET3Gv20780800.1	31.5789	23.1579	beta_vulgaris	KMS65028	50.4202	36.9748
AET3Gv20780800	aegilops_tauschii	AET3Gv20780800.1	48.9474	40.5263	lolium_perenne	cds.KYUSt_chr3.36979	35.2273	29.1667
AET3Gv20780800	aegilops_tauschii	AET3Gv20780800.1	66.3158	56.8421	lolium_perenne	cds.KYUSt_chr3.36984	31.6583	27.1357
AET3Gv20780800	aegilops_tauschii	AET3Gv20780800.1	53.1579	44.2105	lolium_perenne	cds.KYUSt_chr3.36975	40.5622	33.7349
AET3Gv20780800	aegilops_tauschii	AET3Gv20780800.1	79.4737	74.2105	secale_cereale	SECCE3Rv1G0195830.1	93.7888	87.5776
AET3Gv20780800	aegilops_tauschii	AET3Gv20780800.1	84.7368	84.7368	triticum_aestivum	TraesCS3D02G338900.1	100	100
AET3Gv20780800	aegilops_tauschii	AET3Gv20780800.1	77.8947	76.3158	triticum_aestivum	TraesCS3B02G377000.1	97.3684	95.3947
AET3Gv20780800	aegilops_tauschii	AET3Gv20780800.1	43.6842	40.5263	triticum_urartu	TuG1812G0300003851.01.T01	55.7047	51.6779

Showing 1 to 10 of 36 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs