RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	AET3Gv20526700	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	3118 bases	Strand	Minus strand
Position	3D : 298644031 - 298647148	RNA binding domain	Ribosomal_L25p
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
AET3Gv20526700	Ribosomal_L25p	PF01386	2.1e-09	1
AET3Gv20526700	Ribosomal_L25p	PF01386	1.2e-05	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	AET3Gv20526700.1	601	71aa	AET3Gv20526700
-	AET3Gv20526700.3	2385	181aa	AET3Gv20526700
-	AET3Gv20526700.2	1183	294aa	AET3Gv20526700

Gene Model

Click here to download AET3Gv20526700's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download AET3Gv20526700's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AET3Gv20526700

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	40.4762	24.1497	chlamydomonas_reinhardtii	PNW86313	32.5137	19.3989
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	58.8435	40.8163	physcomitrium_patens	PAC:32909627.CDS.1	54.4025	37.7358
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	87.415	86.3946	avena_sativa_sang	AVESA.00010b.r2.3DG0537220.1.CDS	96.2547	95.1311
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	87.7551	86.7347	avena_sativa_sang	AVESA.00010b.r2.3AG0436520.1.CDS	96.6292	95.5056
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	87.7551	86.3946	avena_sativa_sang	AVESA.00010b.r2.3CG0472340.1.CDS	96.6292	95.1311
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	93.5374	91.4966	avena_sativa_ot3098	cds.AVESA.00001b.r3.3Cg0000988.1	92.9054	90.8784
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	92.517	91.1565	avena_sativa_ot3098	cds.AVESA.00001b.r3.3Dg0001073.1	93.4708	92.0962
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	93.5374	91.8367	avena_sativa_ot3098	cds.AVESA.00001b.r3.3Ag0001509.1	92.2819	90.604
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	83.6735	79.932	oryza_rufipogon	ORUFI05G10200.1	92.8302	88.6792
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	84.3537	80.6122	oryza_rufipogon	ORUFI01G24050.1	91.5129	87.4539
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	86.0544	84.3537	lolium_perenne	cds.KYUSt_chr3.22208	94.7566	92.8839
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	84.3537	78.5714	setaria_italica	KQL05699	93.2331	86.8421
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	83.3333	79.932	oryza_punctata	OPUNC01G21440.1	91.7603	88.015
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	84.3537	79.932	oryza_punctata	OPUNC05G08380.1	93.5849	88.6792
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	88.4354	88.4354	secale_cereale	SECCE3Rv1G0179270.1	96.6543	96.6543
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	84.3537	78.5714	setaria_viridis	TKW15158	92.8839	86.5169
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	83.6735	79.932	oryza_glaberrima	ORGLA05G0081800.1	92.8302	88.6792
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	84.3537	80.2721	sorghum_bicolor	EES03203	93.9394	89.3939
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	90.1361	90.1361	triticum_aestivum	TraesCS3D02G215300.1	100	100
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.4558	triticum_aestivum	TraesCS3B02G243200.1	99.2453	99.2453
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.1156	triticum_aestivum	TraesCS3A02G212900.1	98.5019	98.1273
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	80.2721	74.8299	zea_mays	Zm00001eb357570_P001	91.4729	85.2713
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.1156	triticum_turgidum	TRITD3Av1G137330.1	98.5019	98.1273
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	86.0544	82.9932	brachypodium_distachyon	KQK08552	94.052	90.7063
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	84.3537	80.6122	oryza_meridionalis	OMERI07G16970.1	92.1933	88.1041
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	85.3742	81.2925	eragrostis_curvula	TVU34366	94.717	90.1887
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	85.3742	81.6327	eragrostis_curvula	TVU34357	94.717	90.566
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	83.6735	79.932	oryza_indica	BGIOSGA019517-PA	92.8302	88.6792
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	84.3537	80.9524	oryza_indica	BGIOSGA001297-PA	91.5129	87.8229
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	83.6735	79.932	oryza_sativa	Os05t0270000-01	92.8302	88.6792
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	84.3537	80.9524	oryza_sativa	Os01t0593500-00	91.5129	87.8229
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	85.7143	80.6122	oryza_glumipatula	OGLUM05G09900.1	77.0642	72.4771
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	84.0136	80.6122	oryza_glumipatula	OGLUM01G25050.1	91.1439	87.4539
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	83.6735	79.932	oryza_barthii	OBART05G09480.1	92.8302	88.6792
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	84.3537	80.9524	oryza_barthii	OBART01G21370.1	91.5129	87.8229
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	83.3333	78.9116	leersia_perrieri	LPERR01G18270.1	92.1053	87.218
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	96.5986	96.2585	triticum_dicoccoides	TRIDC3BG036360.1	98.6111	98.2639
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.1156	triticum_dicoccoides	TRIDC3AG031760.2	98.5019	98.1273
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	45.9184	42.1769	digitaria_exilis	Dexi5B01G0019160.1:cds	87.0968	80
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	46.5986	43.1973	digitaria_exilis	Dexi5A01G0018890.1:cds	90.1316	83.5526
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	84.6939	80.9524	eragrostis_tef	Et_3B_028676.CDS	81.3726	77.7778
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	85.034	81.2925	eragrostis_tef	Et_3A_024301.CDS	94.3396	90.1887
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	84.0136	79.5918	saccharum_spontaneum	Sspon.03G0012070-2B-mRNA-1:cds	93.5606	88.6364
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	84.3537	79.932	saccharum_spontaneum	Sspon.03G0012070-1A-mRNA-1:cds	94.2966	89.3536
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	54.4218	36.7347	selaginella_moellendorffii	EFJ25126	60.6061	40.9091
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	54.4218	37.0748	selaginella_moellendorffii	EFJ29921	60.6061	41.2879
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	84.0136	78.9116	echinochloa_crusgalli	scaffold11.291.cds	93.2076	87.5472
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	78.9116	72.449	echinochloa_crusgalli	scaffold130.218.cds	69.0476	63.3929
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	83.6735	77.8912	echinochloa_crusgalli	scaffold291.61.cds	92.8302	86.4151
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	84.6939	80.2721	panicum_hallii	PUZ56004	93.9623	89.0566
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	84.0136	79.932	oryza_nivara	ONIVA09G08030.1	93.2076	88.6792
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	78.2313	75.1701	oryza_brachyantha	OB01G30980.1	91.2698	87.6984
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	90.1361	90.1361	triticum_aestivum_mace	TraesMAC3D03G01885730.1	100	100
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.1156	triticum_aestivum_mace	TraesMAC3A03G01407230.1	98.5019	98.1273
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.4558	triticum_aestivum_mace	TraesMAC3B03G01645960.1	99.2453	99.2453
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	90.1361	90.1361	triticum_aestivum_arinalrfor	TraesARI3D03G01920910.1	100	100
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.1156	triticum_aestivum_arinalrfor	TraesARI3A03G01430370.1	98.5019	98.1273
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.4558	triticum_aestivum_arinalrfor	TraesARI3B03G01672790.1	99.2453	99.2453
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	90.1361	90.1361	triticum_aestivum_landmark	TraesLDM3D03G01885790.1	100	100
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.1156	triticum_aestivum_landmark	TraesLDM3A03G01410150.1	98.5019	98.1273
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.4558	triticum_aestivum_landmark	TraesLDM3B03G01645840.1	99.2453	99.2453
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	90.1361	90.1361	triticum_aestivum_julius	TraesJUL3D03G01905620.1	100	100
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.1156	triticum_aestivum_julius	TraesJUL3A03G01421680.1	98.5019	98.1273
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.4558	triticum_aestivum_julius	TraesJUL3B03G01658870.1	99.2453	99.2453
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	90.1361	90.1361	triticum_aestivum_norin61	TraesNOR3D03G01914030.1	100	100
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.1156	triticum_aestivum_norin61	TraesNOR3A03G01430170.1	98.5019	98.1273
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.4558	triticum_aestivum_norin61	TraesNOR3B03G01668070.1	99.2453	99.2453
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	90.1361	90.1361	triticum_aestivum_jagger	TraesJAG3D03G01895730.1	100	100
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.1156	triticum_aestivum_jagger	TraesJAG3A03G01418650.1	98.5019	98.1273
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.4558	triticum_aestivum_jagger	TraesJAG3B03G01654860.1	99.2453	99.2453
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	90.1361	90.1361	triticum_aestivum_lancer	TraesLAC3D03G01828900.1	100	100
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.1156	triticum_aestivum_lancer	TraesLAC3A03G01353430.1	98.5019	98.1273
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.4558	triticum_aestivum_lancer	TraesLAC3B03G01587390.1	99.2453	99.2453
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	90.1361	90.1361	triticum_aestivum_stanley	TraesSTA3D03G01882260.1	100	100
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.1156	triticum_aestivum_stanley	TraesSTA3A03G01400870.1	98.5019	98.1273
AET3Gv20526700	aegilops_tauschii	AET3Gv20526700.2	89.4558	89.4558	triticum_aestivum_stanley	TraesSTA3B03G01637110.1	99.2453	99.2453

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression