RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	AALP_AA3G294900	Gene ID		Accession	-
Symbol		Alias	-	Full Name	hypothetical protein
Status	Confidence	Length	4699 bases	Strand	Plus strand
Position	3 : 21581859 - 21586557	RNA binding domain	CAF1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
KFK39842	CAF1	PF04857	1.5e-67	1
KFK39841	CAF1	PF04857	1.6e-67	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	KFK39841	2589	795aa	KFK39841
-	KFK39842	2577	791aa	KFK39842

Gene Model

Click here to download AALP_AA3G294900's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download AALP_AA3G294900's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AALP_AA3G294900

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AALP_AA3G294900	arabis_alpina	KFK39841	16.2264	7.92453	chondrus_crispus	CDF33493	25.0973	12.2568
AALP_AA3G294900	arabis_alpina	KFK39841	20	11.4465	chlamydomonas_reinhardtii	PNW86527	23.3824	13.3824
AALP_AA3G294900	arabis_alpina	KFK39841	26.1635	15.2201	chlamydomonas_reinhardtii	PNW86684	22.0106	12.8042
AALP_AA3G294900	arabis_alpina	KFK39841	36.478	25.5346	papaver_somniferum	RZC47450	67.5991	47.3193
AALP_AA3G294900	arabis_alpina	KFK39841	38.6164	26.7925	papaver_somniferum	RZC63488	67.9204	47.1239
AALP_AA3G294900	arabis_alpina	KFK39841	35.4717	21.1321	marchantia_polymorpha	PTQ34818	32.3766	19.2882
AALP_AA3G294900	arabis_alpina	KFK39841	47.7987	34.3396	ficus_carica	FCD_00000169-RA:cds	67.9785	48.8372
AALP_AA3G294900	arabis_alpina	KFK39841	55.4717	41.2579	cannabis_sativa_female	cds.evm.model.04.2145	69.3396	51.5723
AALP_AA3G294900	arabis_alpina	KFK39841	55.3459	40.2516	citrullus_lanatus	Cla97C09G170530.1	71.3128	51.8639
AALP_AA3G294900	arabis_alpina	KFK39841	53.3333	37.6101	beta_vulgaris	KMT10118	68.1672	48.0707
AALP_AA3G294900	arabis_alpina	KFK39841	53.8365	38.4906	cucumis_melo	MELO3C015714.2.1	67.19	48.0377
AALP_AA3G294900	arabis_alpina	KFK39841	26.0377	18.3648	cucumis_melo	MELO3C027004.2.1	65.9236	46.4968
AALP_AA3G294900	arabis_alpina	KFK39841	56.2264	41.3836	populus_trichocarpa	Potri.014G177400.1.v4.1	71.4058	52.5559
AALP_AA3G294900	arabis_alpina	KFK39841	54.2138	39.8742	populus_trichocarpa	Potri.014G018500.1.v4.1	71.3576	52.4834
AALP_AA3G294900	arabis_alpina	KFK39841	71.3208	66.2893	arabidopsis_thaliana	AT3G25430.1	91.7476	85.2751
AALP_AA3G294900	arabis_alpina	KFK39841	55.9748	42.3899	malus_domestica_golden	mRNA:MD10G0126100	72.4756	54.886
AALP_AA3G294900	arabis_alpina	KFK39841	56.7296	43.2704	malus_domestica_golden	mRNA:MD05G0130100	72.9773	55.6634
AALP_AA3G294900	arabis_alpina	KFK39841	70.6918	65.0314	brassica_napus	CDY27893	91.2338	83.9286
AALP_AA3G294900	arabis_alpina	KFK39841	70.0629	64.6541	brassica_napus	CDY00839	90.4221	83.4416
AALP_AA3G294900	arabis_alpina	KFK39841	69.434	63.2704	brassica_juncea	cds.BjuB01g20540S	90.3437	82.3241
AALP_AA3G294900	arabis_alpina	KFK39841	55.7233	42.6415	prunus_dulcis	VVA30625	72.1498	55.2117
AALP_AA3G294900	arabis_alpina	KFK39841	56.1006	42.7673	prunus_persica	ONH92685	72.6384	55.3746
AALP_AA3G294900	arabis_alpina	KFK39841	53.9623	39.7484	cajanus_cajan	C.cajan_00761.t	69.53	51.2156
AALP_AA3G294900	arabis_alpina	KFK39841	53.4591	38.9937	lupinus_angustifolius	OIW01326	69.1057	50.4065
AALP_AA3G294900	arabis_alpina	KFK39841	54.0881	38.3648	glycine_max	KRH46574	69.4669	49.273
AALP_AA3G294900	arabis_alpina	KFK39841	52.7044	37.7358	vigna_angularis	KOM37709	67.7994	48.5437
AALP_AA3G294900	arabis_alpina	KFK39841	53.7107	38.3648	pisum_sativum	Psat3g151640.1.cds	68.32	48.8
AALP_AA3G294900	arabis_alpina	KFK39841	53.3333	38.7421	phaseolus_vulgaris	ESW12701	68.7196	49.919
AALP_AA3G294900	arabis_alpina	KFK39841	48.1761	34.717	vigna_unguiculata	Vigun08g077850.1.v1.2	68.5152	49.3739
AALP_AA3G294900	arabis_alpina	KFK39841	53.5849	38.4906	vigna_unguiculata	Vigun05g139900.1.v1.2	68.932	49.5146
AALP_AA3G294900	arabis_alpina	KFK39841	56.1006	41.8868	manihot_esculenta	OAY32906	70.0157	52.2763
AALP_AA3G294900	arabis_alpina	KFK39841	53.0818	38.4906	solanum_lycopersicum	Solyc09g055920.3.1	68.1745	49.4346
AALP_AA3G294900	arabis_alpina	KFK39841	53.3333	38.7421	solanum_tuberosum	PGSC0003DMT400074317	68.4976	49.7577
AALP_AA3G294900	arabis_alpina	KFK39841	52.0755	37.4843	sesamum_indicum	SIN_1024335.t	67.3171	48.4553
AALP_AA3G294900	arabis_alpina	KFK39841	51.8239	36.6038	helianthus_annuus	mRNA:HanXRQr2_Chr16g0739911	66.6667	47.0874
AALP_AA3G294900	arabis_alpina	KFK39841	51.4465	38.6164	lactuca_sativa	cds-PLY94619.1	68.1667	51.1667
AALP_AA3G294900	arabis_alpina	KFK39841	45.0314	30.6918	avena_sativa_sang	AVESA.00010b.r2.7AG1226460.1.CDS	63.1393	43.0335
AALP_AA3G294900	arabis_alpina	KFK39841	46.2893	31.0692	avena_sativa_sang	AVESA.00010b.r2.7DG1381530.1.CDS	61.4357	41.2354
AALP_AA3G294900	arabis_alpina	KFK39841	46.9182	31.195	avena_sativa_sang	AVESA.00010b.r2.5CG0921800.1.CDS	62.2705	41.4023
AALP_AA3G294900	arabis_alpina	KFK39841	46.2893	30.9434	avena_sativa_ot3098	cds.AVESA.00001b.r3.7Dg0000970.1	61.4357	41.0684
AALP_AA3G294900	arabis_alpina	KFK39841	46.2893	31.0692	avena_sativa_ot3098	cds.AVESA.00001b.r3.7Ag0001981.1	61.4357	41.2354
AALP_AA3G294900	arabis_alpina	KFK39841	46.9182	31.3208	avena_sativa_ot3098	cds.AVESA.00001b.r3.5Cg0000542.1	62.2705	41.5693
AALP_AA3G294900	arabis_alpina	KFK39841	48.3019	31.9497	oryza_brachyantha	OB08G23570.1	49.6124	32.8165
AALP_AA3G294900	arabis_alpina	KFK39841	42.8931	28.5535	oryza_rufipogon	ORUFI08G17970.2	63.1481	42.037
AALP_AA3G294900	arabis_alpina	KFK39841	39.8742	26.0377	oryza_punctata	OPUNC08G14070.1	59.9244	39.1304
AALP_AA3G294900	arabis_alpina	KFK39841	42.6415	27.7987	oryza_glaberrima	ORGLA08G0140400.1	61.6364	40.1818
AALP_AA3G294900	arabis_alpina	KFK39841	46.6667	31.195	sorghum_bicolor	EES13909	61.9366	41.4023
AALP_AA3G294900	arabis_alpina	KFK39841	45.7862	31.3208	secale_cereale	SECCE5Rv1G0304200.1	61.1765	41.8487
AALP_AA3G294900	arabis_alpina	KFK39841	46.4151	30.9434	setaria_viridis	TKW10498	61.6027	41.0684
AALP_AA3G294900	arabis_alpina	KFK39841	46.2893	30.9434	setaria_italica	KQL01963	61.4357	41.0684
AALP_AA3G294900	arabis_alpina	KFK39841	49.9371	33.8365	asparagus_officinalis	ONK58381	65.5116	44.3894
AALP_AA3G294900	arabis_alpina	KFK39841	46.4151	31.5723	zea_mays	Zm00001eb179840_P001	61.809	42.0436
AALP_AA3G294900	arabis_alpina	KFK39841	46.1635	30.8176	triticum_aestivum	TraesCS5A02G053500.1	61.6807	41.1765
AALP_AA3G294900	arabis_alpina	KFK39841	45.7862	30.4403	triticum_aestivum	TraesCS5B02G062700.1	61.1765	40.6723
AALP_AA3G294900	arabis_alpina	KFK39841	46.2893	30.9434	triticum_aestivum	TraesCS5D02G064900.1	61.6415	41.206
AALP_AA3G294900	arabis_alpina	KFK39841	48.4277	32.5786	ananas_comosus	Aco013506.1.mrna1	61.9968	41.7069
AALP_AA3G294900	arabis_alpina	KFK39841	22.5157	12.5786	homo_sapiens	ENSP00000376007	33.71	18.8324
AALP_AA3G294900	arabis_alpina	KFK39841	26.0377	14.4654	homo_sapiens	ENSP00000387911	32.3944	17.9969
AALP_AA3G294900	arabis_alpina	KFK39841	30.0629	21.3836	amborella_trichopoda	ERN09043	70.2941	50
AALP_AA3G294900	arabis_alpina	KFK39841	45.9119	30.566	triticum_turgidum	TRITD5Bv1G026210.3	61.3445	40.8403
AALP_AA3G294900	arabis_alpina	KFK39841	46.1635	30.6918	triticum_turgidum	TRITD5Av1G023710.1	61.6807	41.0084
AALP_AA3G294900	arabis_alpina	KFK39841	38.239	26.1635	brachypodium_distachyon	PNT68193	62.1677	42.5358
AALP_AA3G294900	arabis_alpina	KFK39841	23.2704	10.0629	caenorhabditis_elegans	K10C8.1.1	32.6855	14.1343
AALP_AA3G294900	arabis_alpina	KFK39841	56.9811	42.3899	gossypium_raimondii	KJB42612	73.301	54.5307
AALP_AA3G294900	arabis_alpina	KFK39841	56.3522	43.3962	corylus_avellana	Cav01g37330.t1	72.9642	56.1889
AALP_AA3G294900	arabis_alpina	KFK39841	46.2893	30.8176	triticum_urartu	TuG1812G0500000660.01.T01	61.8487	41.1765
AALP_AA3G294900	arabis_alpina	KFK39841	53.7107	41.5094	vitis_vinifera	Vitvi07g04406_P001	71.8855	55.5556
AALP_AA3G294900	arabis_alpina	KFK39841	47.4214	31.6981	eragrostis_curvula	TVU05715	60.8064	40.6452
AALP_AA3G294900	arabis_alpina	KFK39841	53.0818	39.3711	ipomoea_triloba	itb04g27030.t1	65.2241	48.3771
AALP_AA3G294900	arabis_alpina	KFK39841	24.1509	17.1069	oryza_sativa	Os08t0440200-01	65.9794	46.7354
AALP_AA3G294900	arabis_alpina	KFK39841	53.5849	38.9937	fraxinus_excelsior	FRAEX38873_v2_000229340.1.cds	68.4887	49.8392
AALP_AA3G294900	arabis_alpina	KFK39841	47.2956	31.5723	oryza_indica	BGIOSGA028740-PA	62.4585	41.6944
AALP_AA3G294900	arabis_alpina	KFK39841	42.8931	28.6792	oryza_glumipatula	OGLUM08G16860.1	63.1481	42.2222
AALP_AA3G294900	arabis_alpina	KFK39841	42.8931	28.6792	oryza_barthii	OBART08G16070.1	63.1481	42.2222
AALP_AA3G294900	arabis_alpina	KFK39841	51.9497	37.4843	cynara_cardunculus	KVI11554	67.4837	48.6928
AALP_AA3G294900	arabis_alpina	KFK39841	45.0314	30.4403	dioscorea_rotundata	DRNTG_06126.1	65.0909	44
AALP_AA3G294900	arabis_alpina	KFK39841	14.3396	7.42138	ciona_savignyi	ENSCSAVP00000007676	25.3898	13.1403
AALP_AA3G294900	arabis_alpina	KFK39841	69.6855	65.283	eutrema_salsugineum	ESQ37066	90.8197	85.082
AALP_AA3G294900	arabis_alpina	KFK39841	46.6667	35.0943	prunus_avium	Pav_sc0000648.1_g250.1.mk:mrna	70.1323	52.741
AALP_AA3G294900	arabis_alpina	KFK39841	56.9811	43.2704	quercus_lobata	QL09p046994:mrna	73.0645	55.4839
AALP_AA3G294900	arabis_alpina	KFK39841	12.4528	5.91195	galdieria_sulphuraria	EME31552	22.8637	10.8545
AALP_AA3G294900	arabis_alpina	KFK39841	70.566	64.7799	brassica_rapa_ro18	A07p010430.1_BraROA.1	91.0714	83.6039
AALP_AA3G294900	arabis_alpina	KFK39841	46.2893	30.9434	aegilops_tauschii	AET5Gv20159100.2	61.6415	41.206
AALP_AA3G294900	arabis_alpina	KFK39841	52.2013	36.3522	eucalyptus_grandis	KCW57979	67.4797	46.9919
AALP_AA3G294900	arabis_alpina	KFK39841	56.6038	42.3899	pistacia_vera	cds-EVM0002732.1	72.3473	54.1801
AALP_AA3G294900	arabis_alpina	KFK39841	56.6038	42.3899	pistacia_vera	cds-EVM0030726.1	72.3473	54.1801
AALP_AA3G294900	arabis_alpina	KFK39841	57.1069	43.522	juglans_regia	cds.Jr14_07020_p1	72.4083	55.1834
AALP_AA3G294900	arabis_alpina	KFK39841	53.8365	40.8805	juglans_regia	cds.Jr14_07010_p1	72.6655	55.1783
AALP_AA3G294900	arabis_alpina	KFK39841	41.761	28.1761	saccharum_spontaneum	Sspon.06G0005710-1A-mRNA-1:cds	60.5839	40.8759
AALP_AA3G294900	arabis_alpina	KFK39841	45.1572	30.6918	saccharum_spontaneum	Sspon.06G0005710-3C-mRNA-1:cds	61.2628	41.6382
AALP_AA3G294900	arabis_alpina	KFK39841	53.2075	40	nicotiana_attenuata	OIT20210	68.1159	51.2077
AALP_AA3G294900	arabis_alpina	KFK39841	45.9119	30.4403	triticum_dicoccoides	TRIDC5BG010310.4	61.3445	40.6723
AALP_AA3G294900	arabis_alpina	KFK39841	46.1635	30.566	triticum_dicoccoides	TRIDC5AG008160.1	60.9635	40.3654
AALP_AA3G294900	arabis_alpina	KFK39841	54.717	39.6226	olea_europaea	OE9A072991C2	69.9357	50.6431
AALP_AA3G294900	arabis_alpina	KFK39841	34.8428	19.7484	selaginella_moellendorffii	EFJ28195	42.7469	24.2284
AALP_AA3G294900	arabis_alpina	KFK39841	34.9686	19.7484	selaginella_moellendorffii	EFJ29689	42.9012	24.2284
AALP_AA3G294900	arabis_alpina	KFK39841	30.8176	18.239	selaginella_moellendorffii	EFJ13430	40.6302	24.0464
AALP_AA3G294900	arabis_alpina	KFK39841	31.0692	18.1132	selaginella_moellendorffii	EFJ11857	40.9619	23.8806
AALP_AA3G294900	arabis_alpina	KFK39841	47.9245	33.5849	musa_acuminata	Ma09_p01770.1	62.5616	43.8424
AALP_AA3G294900	arabis_alpina	KFK39841	47.044	31.9497	eragrostis_tef	Et_8B_060083.CDS	52.6761	35.7746
AALP_AA3G294900	arabis_alpina	KFK39841	46.0377	30.6918	eragrostis_tef	Et_8A_057732.CDS	61.4094	40.9396
AALP_AA3G294900	arabis_alpina	KFK39841	56.8553	44.1509	actinidia_chinensis	PSR86300	71.746	55.7143
AALP_AA3G294900	arabis_alpina	KFK39841	56.7296	42.8931	quercus_suber	cds-POE46280.1	73.0956	55.2674
AALP_AA3G294900	arabis_alpina	KFK39841	70.566	64.7799	camelina_sativa	Csa15g054140.1	90.6301	83.1987
AALP_AA3G294900	arabis_alpina	KFK39841	70.3145	64.1509	camelina_sativa	Csa01g031350.1	90.3069	82.391
AALP_AA3G294900	arabis_alpina	KFK39841	70.4403	64.4025	camelina_sativa	Csa19g039290.1	91.0569	83.252
AALP_AA3G294900	arabis_alpina	KFK39841	46.2893	31.3208	hordeum_vulgare	HORVU.MOREX.r3.5HG0431960.1	61.8487	41.8487
AALP_AA3G294900	arabis_alpina	KFK39841	54.3396	37.9874	daucus_carota	KZM95374	69.3419	48.4751
AALP_AA3G294900	arabis_alpina	KFK39841	47.4214	31.6981	leersia_perrieri	LPERR08G13340.1	62.4172	41.7219
AALP_AA3G294900	arabis_alpina	KFK39841	56.8553	42.7673	theobroma_cacao	EOX93741	72.5522	54.5746
AALP_AA3G294900	arabis_alpina	KFK39841	45.283	32.8302	citrus_clementina	ESR61223	72.4346	52.5151
AALP_AA3G294900	arabis_alpina	KFK39841	45.6604	31.5723	nymphaea_colorata	NC3G0208150.1:cds	56.8966	39.3417
AALP_AA3G294900	arabis_alpina	KFK39841	45.4088	29.6855	echinochloa_crusgalli	scaffold199.84.cds	45.0125	29.4264
AALP_AA3G294900	arabis_alpina	KFK39841	46.9182	30.8176	echinochloa_crusgalli	scaffold136.116.cds	40.6761	26.7176
AALP_AA3G294900	arabis_alpina	KFK39841	47.1698	30.9434	echinochloa_crusgalli	scaffold35.422.cds	62.396	40.9318
AALP_AA3G294900	arabis_alpina	KFK39841	70.1887	64.4025	brassica_oleracea	Bo7g031040.1	90.5844	83.1169
AALP_AA3G294900	arabis_alpina	KFK39841	45.0314	31.5723	chenopodium_quinoa	AUR62008078-RA:cds	65.3285	45.8029
AALP_AA3G294900	arabis_alpina	KFK39841	44.9057	31.0692	chenopodium_quinoa	AUR62028657-RA:cds	65.146	45.073
AALP_AA3G294900	arabis_alpina	KFK39841	33.5849	20.2516	physcomitrium_patens	Pp3c6_1870V3.2	33.0855	19.9504
AALP_AA3G294900	arabis_alpina	KFK39841	45.9119	30.566	panicum_hallii	PUZ51652	60.9349	40.5676
AALP_AA3G294900	arabis_alpina	KFK39841	54.0881	37.9874	trifolium_pratense	Tp57577_TGAC_v2_mRNA27753	68.9103	48.3974
AALP_AA3G294900	arabis_alpina	KFK39841	56.7296	42.2642	corchorus_capsularis	OMO86802	72.6248	54.1063
AALP_AA3G294900	arabis_alpina	KFK39841	71.4465	66.1635	arabidopsis_halleri	g23363.t1	91.9094	85.1133
AALP_AA3G294900	arabis_alpina	KFK39841	45.9119	31.3208	digitaria_exilis	Dexi6A01G0014720.1:cds	59.8361	40.8197
AALP_AA3G294900	arabis_alpina	KFK39841	40.2516	28.1761	digitaria_exilis	Dexi6B01G0013010.1:cds	59.4796	41.6357
AALP_AA3G294900	arabis_alpina	KFK39841	56.2264	42.6415	rosa_chinensis	PRQ25342	72.9201	55.3018
AALP_AA3G294900	arabis_alpina	KFK39841	15.5975	8.80503	cyanidioschyzon_merolae	CMK240CT	19.9357	11.254
AALP_AA3G294900	arabis_alpina	KFK39841	22.8931	13.5849	chara_braunii	GBG67209	29.12	17.28
AALP_AA3G294900	arabis_alpina	KFK39841	52.4528	37.3585	corymbia_citriodora	cds-KAF8014706.1	67.9153	48.3713
AALP_AA3G294900	arabis_alpina	KFK39841	54.3396	37.7358	coffea_canephora	CDP11722	68.7898	47.7707
AALP_AA3G294900	arabis_alpina	KFK39841	46.4151	32.2013	vigna_radiata	Vradi04g00760.1	63.6207	44.1379
AALP_AA3G294900	arabis_alpina	KFK39841	42.7673	28.5535	oryza_nivara	ONIVA08G17610.2	62.963	42.037

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression