RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	AALP_AA2G130700	Gene ID		Accession	-
Symbol		Alias	-	Full Name	hypothetical protein
Status	Confidence	Length	395 bases	Strand	Plus strand
Position	2 : 19266695 - 19267089	RNA binding domain	Ribosomal_L12
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
KFK41439	Ribosomal_L12	PF00542	3.2e-19	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	KFK41439	395	74aa	KFK41439

Gene Model

Click here to download AALP_AA2G130700's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download AALP_AA2G130700's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AALP_AA2G130700	arabis_alpina	KFK41438	27.8049	21.9512	arabis_alpina	KFK41439	77.027	60.8108

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	59.4595	papaver_somniferum	RZC83254	29.0476	20.9524
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	60.8108	papaver_somniferum	RZC79209	33.3333	24.5902
AALP_AA2G130700	arabis_alpina	KFK41439	79.7297	62.1622	marchantia_polymorpha	PTQ36259	25.7642	20.0873
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	66.2162	ficus_carica	FCD_00034606-RA:cds	32.7869	26.776
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	66.2162	ficus_carica	FCD_00021838-RA:cds	21.7391	17.7536
AALP_AA2G130700	arabis_alpina	KFK41439	83.7838	72.973	cannabis_sativa_female	cds.evm.model.03.1481	28.972	25.2336
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	62.1622	citrullus_lanatus	Cla97C03G055380.1	28.5047	21.4953
AALP_AA2G130700	arabis_alpina	KFK41439	74.3243	59.4595	beta_vulgaris	KMS97734	25.3456	20.2765
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	60.8108	cucumis_melo	MELO3C002405.2.1	28.5047	21.028
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	62.1622	cucumis_sativus	KGN64464	28.5047	21.4953
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	67.5676	populus_trichocarpa	Potri.003G074800.1.v4.1	28.2407	23.1481
AALP_AA2G130700	arabis_alpina	KFK41439	77.027	60.8108	arabidopsis_thaliana	AT2G03130.1	51.8182	40.9091
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	66.2162	malus_domestica_golden	CDS:MD05G0209000.1	54.5455	44.5455
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	68.9189	malus_domestica_golden	CDS:MD10G0193900.1	28.5047	23.8318
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	70.2703	brassica_napus	CDX68354	27.23	24.4131
AALP_AA2G130700	arabis_alpina	KFK41439	77.027	68.9189	brassica_napus	CDY23514	27.2727	24.4019
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	70.2703	brassica_juncea	cds.BjuA07g26450S	27.7512	24.8804
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	71.6216	brassica_juncea	cds.BjuB03g25280S	27.23	24.8826
AALP_AA2G130700	arabis_alpina	KFK41439	83.7838	68.9189	prunus_dulcis	VVA27281	28.972	23.8318
AALP_AA2G130700	arabis_alpina	KFK41439	83.7838	68.9189	prunus_persica	ONI11597	28.972	23.8318
AALP_AA2G130700	arabis_alpina	KFK41439	79.7297	62.1622	cajanus_cajan	C.cajan_32015.t.cds1	27.1889	21.1982
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	59.4595	lupinus_angustifolius	OIW11698	26.9767	20.4651
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	59.4595	lupinus_angustifolius	OIW05344	26.8519	20.3704
AALP_AA2G130700	arabis_alpina	KFK41439	79.7297	60.8108	glycine_max	KRH43682	27.3148	20.8333
AALP_AA2G130700	arabis_alpina	KFK41439	79.7297	62.1622	glycine_max	KRH13773	27.1889	21.1982
AALP_AA2G130700	arabis_alpina	KFK41439	77.027	58.1081	medicago_truncatula	KEH38226	26.3889	19.9074
AALP_AA2G130700	arabis_alpina	KFK41439	75.6757	55.4054	medicago_truncatula	KEH22561	25.8065	18.894
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	60.8108	vigna_angularis	KOM43546	26.9767	20.9302
AALP_AA2G130700	arabis_alpina	KFK41439	74.3243	55.4054	pisum_sativum	Psat1g015120.1.cds1	25.463	18.9815
AALP_AA2G130700	arabis_alpina	KFK41439	77.027	59.4595	pisum_sativum	Psat3g150240.1.cds1	26.2673	20.2765
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	62.1622	phaseolus_vulgaris	ESW21485	26.9767	21.3953
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	62.1622	phaseolus_vulgaris	ESW17503	28.2927	22.439
AALP_AA2G130700	arabis_alpina	KFK41439	79.7297	63.5135	vigna_unguiculata	Vigun05g189700.1.v1.2.CDS.1	27.4419	21.8605
AALP_AA2G130700	arabis_alpina	KFK41439	79.7297	63.5135	vigna_unguiculata	Vigun01g011800.2.v1.2.CDS.1	27.4419	21.8605
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	64.8649	manihot_esculenta	OAY54430	28.2407	22.2222
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	59.4595	solanum_lycopersicum	Solyc02g031970.1.1.1	26.9767	20.4651
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	56.7568	solanum_lycopersicum	Solyc11g071530.1.1.1	28.2927	20.4878
AALP_AA2G130700	arabis_alpina	KFK41439	77.027	54.0541	solanum_tuberosum	PGSC0003DMT400048186	27.8049	19.5122
AALP_AA2G130700	arabis_alpina	KFK41439	77.027	60.8108	solanum_tuberosum	PGSC0003DMT400038646	26.5116	20.9302
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	58.1081	capsicum_annuum	PHT68963	34.9398	25.9036
AALP_AA2G130700	arabis_alpina	KFK41439	79.7297	62.1622	capsicum_annuum	PHT77710	27.3148	21.2963
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	62.1622	sesamum_indicum	SIN_1006810.t.cds1	27.907	21.3953
AALP_AA2G130700	arabis_alpina	KFK41439	79.7297	62.1622	helianthus_annuus	CDS:HanXRQr2_Chr12g0523041.1	27.8302	21.6981
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	63.5135	lactuca_sativa	cds-PLY61722.1	26.8519	21.7593
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	63.5135	lactuca_sativa	cds-PLY80774.1	36.25	29.375
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	60.8108	avena_sativa_sang	AVESA.00010b.r2.1DG0156590.1.CDS.1	30.7692	23.0769
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	60.8108	avena_sativa_sang	AVESA.00010b.r2.1AG0005840.1.CDS.1	30.7692	23.0769
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	60.8108	avena_sativa_sang	AVESA.00010b.r2.1AG0037360.1.CDS.1	27.027	20.2703
AALP_AA2G130700	arabis_alpina	KFK41439	54.0541	41.8919	lolium_perenne	cds.KYUSt_chr1.39208	23.5294	18.2353
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	60.8108	oryza_brachyantha	OB05G32680.1	15.1741	11.194
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	59.4595	oryza_rufipogon	ORUFI05G26910.1	30.303	22.2222
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	58.1081	oryza_punctata	OPUNC05G22690.1	30.9645	21.8274
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	59.4595	oryza_glaberrima	ORGLA05G0216600.1	30.303	22.2222
AALP_AA2G130700	arabis_alpina	KFK41439	83.7838	62.1622	secale_cereale	SECCE1Rv1G0054550.1.CDS.1	32.1244	23.8342
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	66.2162	setaria_viridis	TKW25994	25	20.082
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	66.2162	setaria_italica	KQL14427	31.4433	25.2577
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	62.1622	asparagus_officinalis	ONK81696	29.4416	23.3503
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	59.4595	zea_mays	Zm00001eb343100_P001	31.6062	22.7979
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	58.1081	zea_mays	Zm00001eb295090_P001	30.6122	21.9388
AALP_AA2G130700	arabis_alpina	KFK41439	83.7838	62.1622	triticum_aestivum	TraesCS1B02G403600.1.cds1	25.3061	18.7755
AALP_AA2G130700	arabis_alpina	KFK41439	83.7838	62.1622	triticum_aestivum	TraesCS1A02G381100.1.cds1	31.6327	23.4694
AALP_AA2G130700	arabis_alpina	KFK41439	83.7838	62.1622	triticum_aestivum	TraesCS1D02G388900.1.cds1	31.6327	23.4694
AALP_AA2G130700	arabis_alpina	KFK41439	83.7838	64.8649	amborella_trichopoda	ERM94362	28.8372	22.3256
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	60.8108	amborella_trichopoda	ERN10367	51.3274	39.823
AALP_AA2G130700	arabis_alpina	KFK41439	62.1622	48.6486	amborella_trichopoda	ERN19832	26.9006	21.0526
AALP_AA2G130700	arabis_alpina	KFK41439	83.7838	60.8108	triticum_turgidum	TRITD1Bv1G205990.1	31.6327	22.9592
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	58.1081	brachypodium_distachyon	PNT70755	29.8507	21.393
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	66.2162	gossypium_raimondii	KJB32916	28.5047	22.8972
AALP_AA2G130700	arabis_alpina	KFK41439	79.7297	56.7568	corylus_avellana	Cav02g26380.t1.cds1	28.2297	20.0957
AALP_AA2G130700	arabis_alpina	KFK41439	79.7297	56.7568	corylus_avellana	Cav02g26440.t1.cds1	28.2297	20.0957
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	68.9189	vitis_vinifera	Vitvi01g00114_P001	29.6117	24.7573
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	62.1622	eragrostis_curvula	TVT97431	17.5793	13.2565
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	63.5135	eragrostis_curvula	TVT98798	17.8571	13.9881
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	58.1081	ipomoea_triloba	itb10g17280.t2	26.9767	20
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	59.4595	oryza_sativa	Os05t0554100-01	30.303	22.2222
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	59.4595	oryza_meridionalis	OMERI05G22420.1	30.8081	22.2222
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	60.8108	fraxinus_excelsior	FRAEX38873_v2_000088380.3.cds	22.0532	17.1103
AALP_AA2G130700	arabis_alpina	KFK41439	79.7297	62.1622	fraxinus_excelsior	FRAEX38873_v2_000373980.1.cds1	27.4419	21.3953
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	59.4595	oryza_indica	BGIOSGA017600-PA	30.303	22.2222
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	59.4595	oryza_glumipatula	OGLUM05G26720.1	30.303	22.2222
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	59.4595	oryza_barthii	OBART05G25120.1	30.303	22.2222
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	64.8649	cynara_cardunculus	KVH93837	28.91	22.7488
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	63.5135	dioscorea_rotundata	DRNTG_15734.1.cds1	28.2927	22.9268
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	63.5135	dioscorea_rotundata	DRNTG_18543.1.cds1	28.2927	22.9268
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	68.9189	eutrema_salsugineum	ESQ28201	27.7778	23.6111
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	66.2162	quercus_lobata	QL11p013638:mrna:CDS:3	28.7081	23.445
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	63.5135	eucalyptus_grandis	KCW75546	27.3973	21.4612
AALP_AA2G130700	arabis_alpina	KFK41439	79.7297	59.4595	pistacia_vera	cds-EVM0024563.1	27.8302	20.7547
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	60.8108	juglans_regia	cds.Jr_Scaffold_13_00050_p1	44.7761	33.5821
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	60.8108	juglans_regia	cds.Jr11_20670_p1	28.7081	21.5311
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	62.1622	juglans_regia	cds.Jr03_09150_p1	28.7081	22.0096
AALP_AA2G130700	arabis_alpina	KFK41439	71.6216	55.4054	juglans_regia	cds.Jr08_19600_p1	51.9608	40.1961
AALP_AA2G130700	arabis_alpina	KFK41439	79.7297	62.1622	saccharum_spontaneum	Sspon.07G0021950-1B-mRNA-1:cds	27.8302	21.6981
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	63.5135	saccharum_spontaneum	Sspon.07G0021910-3D-mRNA-1:cds	31.6062	24.3523
AALP_AA2G130700	arabis_alpina	KFK41439	77.027	60.8108	nicotiana_attenuata	OIT03376	26.5116	20.9302
AALP_AA2G130700	arabis_alpina	KFK41439	83.7838	62.1622	triticum_dicoccoides	TRIDC1AG056030.3	29.9517	22.2222
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	63.5135	olea_europaea	OE9A050179C2	21.1268	16.5493
AALP_AA2G130700	arabis_alpina	KFK41439	77.027	59.4595	olea_europaea	OE9A049554C1	26.5116	20.4651
AALP_AA2G130700	arabis_alpina	KFK41439	75.6757	62.1622	selaginella_moellendorffii	EFJ12787	37.0861	30.4636
AALP_AA2G130700	arabis_alpina	KFK41439	75.6757	62.1622	selaginella_moellendorffii	EFJ13947	37.0861	30.4636
AALP_AA2G130700	arabis_alpina	KFK41439	79.7297	56.7568	musa_acuminata	Ma09_p20220.1	28.3654	20.1923
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	63.5135	eragrostis_tef	Et_9B_063902.CDS1	31.1224	23.9796
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	62.1622	eragrostis_tef	Et_9A_063389.CDS	26.3158	20.1754
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	63.5135	actinidia_chinensis	PSS11092	28.3721	21.8605
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	66.2162	quercus_suber	cds-POE57013.1	28.7081	23.445
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	64.8649	quercus_suber	cds-POE57012.1	17.8042	14.2433
AALP_AA2G130700	arabis_alpina	KFK41439	75.6757	66.2162	camelina_sativa	Csa09g005350.1.cds1	70.8861	62.0253
AALP_AA2G130700	arabis_alpina	KFK41439	77.027	60.8108	camelina_sativa	Csa04g008560.1.cds1	72.1519	56.962
AALP_AA2G130700	arabis_alpina	KFK41439	75.6757	64.8649	camelina_sativa	Csa06g003070.1.cds1	70.8861	60.7595
AALP_AA2G130700	arabis_alpina	KFK41439	79.7297	63.5135	daucus_carota	KZM87083	27.6995	22.0657
AALP_AA2G130700	arabis_alpina	KFK41439	79.7297	63.5135	daucus_carota	KZM80192	54.6296	43.5185
AALP_AA2G130700	arabis_alpina	KFK41439	79.7297	63.5135	daucus_carota	KZN11682	27.6995	22.0657
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	59.4595	leersia_perrieri	LPERR05G20900.1	30.303	22.2222
AALP_AA2G130700	arabis_alpina	KFK41439	72.973	59.4595	ostreococcus_lucimarinus	ABO99846	39.1304	31.8841
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	66.2162	theobroma_cacao	EOX96872	26.0684	20.9402
AALP_AA2G130700	arabis_alpina	KFK41439	79.7297	59.4595	citrus_clementina	ESR61890	26.9406	20.0913
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	58.1081	nymphaea_colorata	NC9G0170280.1:cds	28.0193	20.7729
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	62.1622	echinochloa_crusgalli	scaffold13.1002.cds	30.9278	23.7113
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	63.5135	echinochloa_crusgalli	scaffold310.64.cds	31.4433	24.2268
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	60.8108	echinochloa_crusgalli	scaffold77.464.cds	31.6062	23.3161
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	62.1622	echinochloa_crusgalli	scaffold1.352.cds	30.9278	23.7113
AALP_AA2G130700	arabis_alpina	KFK41439	77.027	68.9189	brassica_oleracea	Bo6g094890.1	27.2727	24.4019
AALP_AA2G130700	arabis_alpina	KFK41439	75.6757	55.4054	chenopodium_quinoa	AUR62001367-RA:cds	25.6881	18.8073
AALP_AA2G130700	arabis_alpina	KFK41439	75.6757	55.4054	chenopodium_quinoa	AUR62025583-RA:cds	25.6881	18.8073
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	63.5135	panicum_hallii	PUZ64873	25.7511	20.1717
AALP_AA2G130700	arabis_alpina	KFK41439	77.027	58.1081	trifolium_pratense	Tp57577_TGAC_v2_mRNA29396	26.3889	19.9074
AALP_AA2G130700	arabis_alpina	KFK41439	77.027	58.1081	trifolium_pratense	Tp57577_TGAC_v2_mRNA30153	26.2673	19.8157
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	67.5676	corchorus_capsularis	OMO74955	27.6018	22.6244
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	62.1622	digitaria_exilis	Dexi3B01G0017400.1:cds	24.1107	18.1818
AALP_AA2G130700	arabis_alpina	KFK41439	68.9189	55.4054	arabidopsis_lyrata	fgenesh2_kg.5__213__AT2G03130.1	50	40.1961
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	70.2703	rosa_chinensis	PRQ30068	28.6385	24.4131
AALP_AA2G130700	arabis_alpina	KFK41439	74.3243	62.1622	chara_braunii	GBG68327	27.9188	23.3503
AALP_AA2G130700	arabis_alpina	KFK41439	82.4324	64.8649	corymbia_citriodora	cds-KAF8013792.1	28.1106	22.1198
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	60.8108	corymbia_citriodora	cds-KAF8013791.1	68.1818	51.1364
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	62.1622	kalanchoe_fedtschenkoi	Kaladp0068s0216.1.v1.1.CDS.1	27.907	21.3953
AALP_AA2G130700	arabis_alpina	KFK41439	79.7297	62.1622	coffea_canephora	CDP11277	27.4419	21.3953
AALP_AA2G130700	arabis_alpina	KFK41439	78.3784	62.1622	vigna_radiata	Vradi05g23440.1	26.9767	21.3953
AALP_AA2G130700	arabis_alpina	KFK41439	81.0811	59.4595	oryza_nivara	ONIVA05G26320.1	30.303	22.2222

Gene Ontology

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Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression