Description

Ensembl ID AALP_AA2G103600 Gene ID Accession -
Symbol Alias - Full Name hypothetical protein
Status Confidence Length 3820 bases Strand Plus strand
Position 2 : 16031263 - 16035082 RNA binding domain RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_6 , RNA_pol_Rpb2_4 , RNA_pol_Rpb2_5
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
KFK41237 RNA_pol_Rpb2_3 PF04565 4.3e-26 1
KFK41237 RNA_pol_Rpb2_7 PF04560 1.1e-36 2
KFK41237 RNA_pol_Rpb2_6 PF00562 6.3e-126 3
KFK41237 RNA_pol_Rpb2_4 PF04566 1.7e-22 4
KFK41237 RNA_pol_Rpb2_5 PF04567 7.8e-16 5

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- KFK41237 2335 718aa KFK41237

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AALP_AA2G103600arabis_alpinaKFK287570.4175370.417537arabis_alpinaKFK412370.2785520.278552
AALP_AA2G103600arabis_alpinaKFK4186935.857325.1523arabis_alpinaKFK4123757.381640.2507
AALP_AA2G103600arabis_alpinaKFK4481928.122319.5412arabis_alpinaKFK4123746.100332.0334
AALP_AA2G103600arabis_alpinaKFK4427034.667824.276arabis_alpinaKFK4123756.685239.6936

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AALP_AA2G103600arabis_alpinaKFK4123778.412364.3454chondrus_crispusCDF3813249.38640.5263
AALP_AA2G103600arabis_alpinaKFK4123780.640767.4095chlamydomonas_reinhardtiiPNW8615535.829229.9505
AALP_AA2G103600arabis_alpinaKFK4123792.200686.6295papaver_somniferumRZC6350959.054455.4862
AALP_AA2G103600arabis_alpinaKFK4123782.729876.4624papaver_somniferumRZC4746153.178249.1495
AALP_AA2G103600arabis_alpinaKFK412379.74937.52089marchantia_polymorphaPTQ2669153.435141.2214
AALP_AA2G103600arabis_alpinaKFK412379.610037.52089marchantia_polymorphaPTQ4543152.671841.2214
AALP_AA2G103600arabis_alpinaKFK4123791.225688.4401ficus_caricaFCD_00012603-RA:cds57.305355.5556
AALP_AA2G103600arabis_alpinaKFK4123797.632394.1504cannabis_sativa_femalecds.evm.model.09.1658.759456.6639
AALP_AA2G103600arabis_alpinaKFK4123797.771693.7326citrullus_lanatusCla97C01G022860.158.597756.177
AALP_AA2G103600arabis_alpinaKFK4123797.353894.1504beta_vulgarisKMT0424658.2556.3333
AALP_AA2G103600arabis_alpinaKFK4123797.771693.7326cucumis_meloMELO3C007284.2.159.290556.8412
AALP_AA2G103600arabis_alpinaKFK4123797.771693.7326cucumis_sativusKGN4922656.2553.9263
AALP_AA2G103600arabis_alpinaKFK4123798.050194.1504populus_trichocarpaPotri.004G043200.2.v4.158.764656.4274
AALP_AA2G103600arabis_alpinaKFK4123797.771694.7075malus_domestica_goldenmRNA:MD05G026360058.843356.9992
AALP_AA2G103600arabis_alpinaKFK4123795.403992.3398malus_domestica_goldenmRNA:MD10G025040058.198856.3297
AALP_AA2G103600arabis_alpinaKFK4123792.200691.7827brassica_napusCDY6970498.511998.0655
AALP_AA2G103600arabis_alpinaKFK4123765.320363.2312brassica_napusCDY2741375.160372.7564
AALP_AA2G103600arabis_alpinaKFK4123797.910994.7075prunus_dulcisVVA2446758.976557.047
AALP_AA2G103600arabis_alpinaKFK4123797.910994.7075prunus_persicaONI1042358.976557.047
AALP_AA2G103600arabis_alpinaKFK4123797.771694.0111cajanus_cajanC.cajan_16979.t58.79456.5327
AALP_AA2G103600arabis_alpinaKFK4123797.910994.7075lupinus_angustifoliusOIV9174758.681156.7613
AALP_AA2G103600arabis_alpinaKFK4123798.050194.7075lupinus_angustifoliusOIV9615558.715656.7139
AALP_AA2G103600arabis_alpinaKFK4123768.802262.3955glycine_maxKRH1086760.317554.7009
AALP_AA2G103600arabis_alpinaKFK4123798.050194.1504medicago_truncatulaAES5962358.912156.569
AALP_AA2G103600arabis_alpinaKFK4123711.838410.585vigna_angularisKOM2681685.858676.7677
AALP_AA2G103600arabis_alpinaKFK4123798.050194.8468vigna_angularisKOM5378357.752355.8655
AALP_AA2G103600arabis_alpinaKFK4123797.910994.8468vigna_angularisKOM3991358.730256.8922
AALP_AA2G103600arabis_alpinaKFK4123798.189494.2897pisum_sativumPsat6g005080.1.cds58.995856.6527
AALP_AA2G103600arabis_alpinaKFK4123797.910993.7326pisum_sativumPsat0s3839g0040.1.cds83.59180.0238
AALP_AA2G103600arabis_alpinaKFK4123798.050194.7075phaseolus_vulgarisESW2016258.961556.9514
AALP_AA2G103600arabis_alpinaKFK4123797.910994.5682phaseolus_vulgarisESW1070158.779356.7726
AALP_AA2G103600arabis_alpinaKFK4123793.314889.5543vigna_unguiculataVigun09g035100.3.v1.255.926553.6728
AALP_AA2G103600arabis_alpinaKFK4123798.328794.7075manihot_esculentaOAY2618559.228257.047
AALP_AA2G103600arabis_alpinaKFK4123797.49394.8468solanum_lycopersicumSolyc02g078260.3.158.774157.1788
AALP_AA2G103600arabis_alpinaKFK4123797.49394.5682solanum_tuberosumPGSC0003DMT40007642758.774157.0109
AALP_AA2G103600arabis_alpinaKFK4123774.930468.663capsicum_annuumPHT7311651.880447.541
AALP_AA2G103600arabis_alpinaKFK4123794.289790.8078sesamum_indicumSIN_1027053.t61.04658.7917
AALP_AA2G103600arabis_alpinaKFK4123791.92288.9972sesamum_indicumSIN_1005274.t57.044155.229
AALP_AA2G103600arabis_alpinaKFK4123796.796793.8719helianthus_annuusmRNA:HanXRQr2_Chr15g069838158.110456.3545
AALP_AA2G103600arabis_alpinaKFK4123796.796793.8719helianthus_annuusmRNA:HanXRQr2_Chr04g018705158.403456.6387
AALP_AA2G103600arabis_alpinaKFK4123794.846889.2758lactuca_sativacds-PLY65654.157.27553.9109
AALP_AA2G103600arabis_alpinaKFK4123796.378891.922avena_sativa_sangAVESA.00010b.r2.UnG1404330.1.CDS80.465176.7442
AALP_AA2G103600arabis_alpinaKFK4123796.378891.7827avena_sativa_sangAVESA.00010b.r2.4DG0742190.1.CDS56.535953.8399
AALP_AA2G103600arabis_alpinaKFK4123796.657491.922avena_sativa_sangAVESA.00010b.r2.7CG0693540.1.CDS63.553160.4396
AALP_AA2G103600arabis_alpinaKFK4123796.657491.922avena_sativa_ot3098cds.AVESA.00001b.r3.7Cg0001274.256.699353.9216
AALP_AA2G103600arabis_alpinaKFK4123796.378891.922avena_sativa_ot3098cds.AVESA.00001b.r3.4Ag0001040.256.535953.9216
AALP_AA2G103600arabis_alpinaKFK4123796.378891.7827avena_sativa_ot3098cds.AVESA.00001b.r3.4Dg0001400.156.535953.8399
AALP_AA2G103600arabis_alpinaKFK4123796.100391.7827lolium_perennecds.KYUSt_chr4.1680742.937141.0081
AALP_AA2G103600arabis_alpinaKFK412371.114210.835655oryza_longistaminataKN540142.1_FGP0013.076922.30769
AALP_AA2G103600arabis_alpinaKFK4123796.378892.7577oryza_brachyanthaOB03G35300.156.168854.0584
AALP_AA2G103600arabis_alpinaKFK4123796.239692.6184oryza_rufipogonORUFI03G28650.157.487555.3245
AALP_AA2G103600arabis_alpinaKFK4123796.518192.8969oryza_punctataOPUNC03G25150.263.461561.0806
AALP_AA2G103600arabis_alpinaKFK4123796.518192.8969oryza_glaberrimaORGLA03G0256300.156.710354.5827
AALP_AA2G103600arabis_alpinaKFK4123795.543291.2256sorghum_bicolorKXG3794355.636753.1225
AALP_AA2G103600arabis_alpinaKFK4123795.96191.922secale_cerealeSECCE5Rv1G0350920.156.429254.0541
AALP_AA2G103600arabis_alpinaKFK4123796.239692.4791setaria_viridisTKV9229956.270454.0717
AALP_AA2G103600arabis_alpinaKFK4123796.239692.4791setaria_italicaKQK8793156.362254.1599
AALP_AA2G103600arabis_alpinaKFK4123794.707590.39asparagus_officinalisONK7363355.374652.8502
AALP_AA2G103600arabis_alpinaKFK4123795.682491.6435zea_maysZm00001eb218650_P00155.899153.5395
AALP_AA2G103600arabis_alpinaKFK4123795.682491.922zea_maysZm00001eb050350_P00155.672653.4846
AALP_AA2G103600arabis_alpinaKFK4123795.96191.922triticum_aestivumTraesCS5B02G376200.256.429254.0541
AALP_AA2G103600arabis_alpinaKFK4123795.96191.922triticum_aestivumTraesCS5D02G383900.256.429254.0541
AALP_AA2G103600arabis_alpinaKFK4123795.96191.922triticum_aestivumTraesCS5A02G374300.256.429254.0541
AALP_AA2G103600arabis_alpinaKFK4123796.796793.5933ananas_comosusAco014603.1.mrna158.55156.6133
AALP_AA2G103600arabis_alpinaKFK4123781.615668.2451homo_sapiensENSP0000031273549.914841.7376
AALP_AA2G103600arabis_alpinaKFK4123722.423419.7772amborella_trichopodaERN2050489.944179.3296
AALP_AA2G103600arabis_alpinaKFK4123780.362167.2702drosophila_melanogasterFBpp031092649.064641.0714
AALP_AA2G103600arabis_alpinaKFK4123795.96191.922triticum_turgidumTRITD5Bv1G192360.356.429254.0541
AALP_AA2G103600arabis_alpinaKFK4123795.96191.922triticum_turgidumTRITD5Av1G198880.356.429254.0541
AALP_AA2G103600arabis_alpinaKFK4123796.239692.6184brachypodium_distachyonKQK1397856.270454.1531
AALP_AA2G103600arabis_alpinaKFK4123779.944366.8524caenorhabditis_elegansC26E6.4.148.073740.201
AALP_AA2G103600arabis_alpinaKFK4123797.910994.7075gossypium_raimondiiKJB6862359.125357.1909
AALP_AA2G103600arabis_alpinaKFK4123728.27324.5125corylus_avellanaCav02g30080.t163.437555
AALP_AA2G103600arabis_alpinaKFK4123798.050194.8468corylus_avellanaCav02g30050.t158.229956.3275
AALP_AA2G103600arabis_alpinaKFK4123795.96192.0613triticum_urartuTuG1812G0500004027.01.T0155.47553.2206
AALP_AA2G103600arabis_alpinaKFK4123796.935992.8969vitis_viniferaVitvi12g00313_P00158.340355.9095
AALP_AA2G103600arabis_alpinaKFK4123796.239692.3398eragrostis_curvulaTVU4591756.362254.0783
AALP_AA2G103600arabis_alpinaKFK4123788.440182.0334ipomoea_trilobaitb02g07810.t155.073751.0841
AALP_AA2G103600arabis_alpinaKFK4123796.518192.8969oryza_meridionalisOMERI03G24450.262.771760.4167
AALP_AA2G103600arabis_alpinaKFK4123797.214594.5682fraxinus_excelsiorFRAEX38873_v2_000156720.1.cds49.750548.3963
AALP_AA2G103600arabis_alpinaKFK4123796.518192.8969oryza_indicaBGIOSGA013221-PA56.710354.5827
AALP_AA2G103600arabis_alpinaKFK4123796.518192.8969oryza_glumipatulaOGLUM03G28190.157.415155.261
AALP_AA2G103600arabis_alpinaKFK4123796.518192.8969oryza_barthiiOBART03G27520.157.415155.261
AALP_AA2G103600arabis_alpinaKFK4123769.637965.5989cynara_cardunculusKVH8953569.832465.7821
AALP_AA2G103600arabis_alpinaKFK4123796.935992.2006dioscorea_rotundataDRNTG_29641.158.291555.4439
AALP_AA2G103600arabis_alpinaKFK4123780.919269.7772ciona_savignyiENSCSAVP0000000023546.554540.1442
AALP_AA2G103600arabis_alpinaKFK4123764.62462.5348prunus_aviumPav_sc0001305.1_g560.1.mk:mrna90.980488.0392
AALP_AA2G103600arabis_alpinaKFK4123797.49394.2897quercus_lobataQL05p040208:mrna58.774156.843
AALP_AA2G103600arabis_alpinaKFK4123781.33768.663galdieria_sulphurariaEME2751049.324341.6385
AALP_AA2G103600arabis_alpinaKFK4123700galdieria_sulphurariaEME2586600
AALP_AA2G103600arabis_alpinaKFK4123780.501467.2702saccharomyces_cerevisiaeYOR151C47.222239.4608
AALP_AA2G103600arabis_alpinaKFK4123795.96191.922aegilops_tauschiiAET5Gv20875300.2156.429254.0541
AALP_AA2G103600arabis_alpinaKFK4123797.632394.9861eucalyptus_grandisKCW7459358.563156.9758
AALP_AA2G103600arabis_alpinaKFK4123797.910995.1254pistacia_veracds-EVM0025516.158.927157.2506
AALP_AA2G103600arabis_alpinaKFK4123797.910995.1254pistacia_veracds-EVM0029731.158.927157.2506
AALP_AA2G103600arabis_alpinaKFK4123797.632393.8719juglans_regiacds.Jr03_07270_p158.808756.5436
AALP_AA2G103600arabis_alpinaKFK4123752.50750.2786saccharum_spontaneumSspon.01G0055960-1C-mRNA-195.20291.1616
AALP_AA2G103600arabis_alpinaKFK412370.974930.557103saccharum_spontaneumSspon.01G0024270-1A-mRNA-1:cds1.876681.07239
AALP_AA2G103600arabis_alpinaKFK4123797.632395.2646nicotiana_attenuataOIT0550458.858157.4307
AALP_AA2G103600arabis_alpinaKFK4123795.96191.922triticum_dicoccoidesTRIDC5AG054710.156.521754.1427
AALP_AA2G103600arabis_alpinaKFK4123795.96191.922triticum_dicoccoidesTRIDC5BG058630.156.521754.1427
AALP_AA2G103600arabis_alpinaKFK4123797.353894.7075olea_europaeaOE9A004730C158.690257.0949
AALP_AA2G103600arabis_alpinaKFK4123797.214594.8468olea_europaeaOE9A065618C258.655557.2269
AALP_AA2G103600arabis_alpinaKFK4123793.593387.7437selaginella_moellendorffiiEFJ2675357.045853.4805
AALP_AA2G103600arabis_alpinaKFK4123793.732687.7437selaginella_moellendorffiiEFJ2644957.130753.4805
AALP_AA2G103600arabis_alpinaKFK4123796.796792.7577musa_acuminataMa04_p25510.158.699356.25
AALP_AA2G103600arabis_alpinaKFK4123796.239692.3398eragrostis_tefEt_4B_037472.CDS55.770853.5109
AALP_AA2G103600arabis_alpinaKFK4123796.239692.3398eragrostis_tefEt_4A_033286.CDS55.103752.8708
AALP_AA2G103600arabis_alpinaKFK4123797.075294.1504actinidia_chinensisPSS2464258.326456.569
AALP_AA2G103600arabis_alpinaKFK4123797.49394.2897quercus_subercds-POE59926.158.774156.843
AALP_AA2G103600arabis_alpinaKFK4123785.933284.4011camelina_sativaCsa11g024650.156.398555.3931
AALP_AA2G103600arabis_alpinaKFK4123799.303697.7716camelina_sativaCsa10g021630.160.016859.0909
AALP_AA2G103600arabis_alpinaKFK4123738.022337.3259camelina_sativaCsa12g036540.198.91397.1014
AALP_AA2G103600arabis_alpinaKFK4123796.796793.5933daucus_carotaKZN1142058.305456.3758
AALP_AA2G103600arabis_alpinaKFK4123796.378893.0362leersia_perrieriLPERR03G22810.256.861154.8891
AALP_AA2G103600arabis_alpinaKFK4123786.490273.8162ostreococcus_lucimarinusABO9373952.896145.1448
AALP_AA2G103600arabis_alpinaKFK4123797.910994.7075theobroma_cacaoEOY2825359.125357.1909
AALP_AA2G103600arabis_alpinaKFK4123797.910995.4039citrus_clementinaESR3683458.828557.3222
AALP_AA2G103600arabis_alpinaKFK4123722.423418.3844nymphaea_colorataNC2G0264790.1:cds46.397738.0403
AALP_AA2G103600arabis_alpinaKFK4123796.100391.7827echinochloa_crusgalliscaffold111.407.cds56.188953.6645
AALP_AA2G103600arabis_alpinaKFK4123796.378892.0613echinochloa_crusgalliscaffold20.356.cds56.397753.8712
AALP_AA2G103600arabis_alpinaKFK4123794.707590.8078echinochloa_crusgalliscaffold55.464.cds55.646553.3552
AALP_AA2G103600arabis_alpinaKFK4123758.495857.3816brassica_oleraceaBo7g107520.188.050386.3732
AALP_AA2G103600arabis_alpinaKFK4123797.075293.0362chenopodium_quinoaAUR62017013-RA:cds61.19458.6479
AALP_AA2G103600arabis_alpinaKFK4123797.075292.8969chenopodium_quinoaAUR62014817-RA:cds61.19458.5601
AALP_AA2G103600arabis_alpinaKFK4123793.871987.883physcomitrium_patensPp3c2_10910V3.256.877653.2489
AALP_AA2G103600arabis_alpinaKFK4123796.100392.2006panicum_halliiPUZ3779356.097653.8211
AALP_AA2G103600arabis_alpinaKFK4123797.632393.5933trifolium_pratenseTp57577_TGAC_v2_mRNA686858.416756
AALP_AA2G103600arabis_alpinaKFK4123734.401132.312trifolium_pratenseTp57577_TGAC_v2_mRNA1550293.560687.8788
AALP_AA2G103600arabis_alpinaKFK4123797.771695.1254corchorus_capsularisOMO7642559.041257.4432
AALP_AA2G103600arabis_alpinaKFK4123790.947187.6045digitaria_exilisDexi9A01G0015240.1:cds55.012652.9907
AALP_AA2G103600arabis_alpinaKFK4123784.122681.1978digitaria_exilisDexi9B01G0013270.1:cds51.273349.4907
AALP_AA2G103600arabis_alpinaKFK4123714.345412.5348rosa_chinensisPRQ5488475.182565.6934
AALP_AA2G103600arabis_alpinaKFK4123774.373359.61cyanidioschyzon_merolaeCMH117CT45.101436.1486
AALP_AA2G103600arabis_alpinaKFK4123791.364985.0975chara_brauniiGBG8976161.886857.6415
AALP_AA2G103600arabis_alpinaKFK4123789.136578.9694chara_brauniiGBG8722549.042143.4483
AALP_AA2G103600arabis_alpinaKFK4123797.49394.8468corymbia_citriodoracds-KAF8029948.158.724857.1309
AALP_AA2G103600arabis_alpinaKFK4123793.45488.5794kalanchoe_fedtschenkoiKaladp0039s0221.1.v1.170.409266.7366
AALP_AA2G103600arabis_alpinaKFK4123795.264691.922kalanchoe_fedtschenkoiKaladp0002s0046.1.v1.157.47955.4622
AALP_AA2G103600arabis_alpinaKFK4123794.707588.8579coffea_canephoraCDP1478256.619553.1224
AALP_AA2G103600arabis_alpinaKFK4123796.935994.0111coffea_canephoraCDO9954558.340356.5801
AALP_AA2G103600arabis_alpinaKFK4123797.910994.7075vigna_radiataVradi05g02300.159.475557.5296
AALP_AA2G103600arabis_alpinaKFK4123794.42991.3649vigna_radiataVradi10g10910.157.40955.5461
AALP_AA2G103600arabis_alpinaKFK4123796.518192.8969oryza_nivaraONIVA03G28490.157.415155.261

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression