RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	A4U43_C10F18940	Gene ID		Accession	-
Symbol		Alias	-	Full Name	uncharacterized protein
Status	Confidence	Length	405 bases	Strand	Minus strand
Position	10 : 72219676 - 72220080	RNA binding domain	NOGCT
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ONK57328	NOGCT	PF08155	2.9e-24	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID

Gene Model

Click here to download A4U43_C10F18940's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download A4U43_C10F18940's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C10F18940

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C10F18940	asparagus_officinalis	ONK57328	59.7015	41.0448	lactuca_sativa	cds-PLY82199.1	32.6531	22.449
A4U43_C10F18940	asparagus_officinalis	ONK57328	58.9552	47.0149	triticum_urartu	TuG1812G0500003648.01.T01.cds435271	29.6992	23.6842
A4U43_C10F18940	asparagus_officinalis	ONK57328	5.97015	4.47761	prunus_avium	Pav_sc0005934.1_g020.1.mk:CDS:1	10.8108	8.10811
A4U43_C10F18940	asparagus_officinalis	ONK57328	67.1642	50.7463	rosa_chinensis	PRQ45445	46.3918	35.0515
A4U43_C10F18940	asparagus_officinalis	ONK57328	47.7612	33.5821	olea_europaea	OE9A119422C1	28.6996	20.1794
A4U43_C10F18940	asparagus_officinalis	ONK57328	60.4478	47.0149	triticum_dicoccoides	TRIDC5AG049580.2	29.1367	22.6619

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression