RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	A4U43_C07F3440	Gene ID		Accession	-
Symbol		Alias	-	Full Name	uncharacterized protein
Status	Confidence	Length	606 bases	Strand	Minus strand
Position	7 : 8276130 - 8276735	RNA binding domain	Ribosomal_L10
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ONK62396	Ribosomal_L10	PF00466	9e-13	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID

Gene Model

Click here to download A4U43_C07F3440's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download A4U43_C07F3440's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C07F3440

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C07F3440	asparagus_officinalis	ONK62396	40.678	20.339	chondrus_crispus	CDF34742	32	16
A4U43_C07F3440	asparagus_officinalis	ONK62396	42.3729	25.4237	chlamydomonas_reinhardtii	PNW82078	31.9149	19.1489
A4U43_C07F3440	asparagus_officinalis	ONK62396	54.2373	38.9831	physcomitrium_patens	Pp3c1_1330V3.2	43.4389	31.2217
A4U43_C07F3440	asparagus_officinalis	ONK62396	53.1073	38.4181	physcomitrium_patens	Pp3c2_35950V3.2	41.7778	30.2222
A4U43_C07F3440	asparagus_officinalis	ONK62396	54.2373	40.113	marchantia_polymorpha	PTQ31135	39.1837	28.9796
A4U43_C07F3440	asparagus_officinalis	ONK62396	50.8475	38.4181	arabidopsis_thaliana	AT3G12370.1	52.6316	39.7661
A4U43_C07F3440	asparagus_officinalis	ONK62396	50.8475	37.2881	brassica_napus	CDY42146	52.9412	38.8235
A4U43_C07F3440	asparagus_officinalis	ONK62396	50.8475	37.2881	brassica_napus	CDY08435	52.9412	38.8235
A4U43_C07F3440	asparagus_officinalis	ONK62396	50.8475	36.7232	brassica_juncea	cds.BjuA01g05320S	53.2544	38.4615
A4U43_C07F3440	asparagus_officinalis	ONK62396	50.8475	37.2881	brassica_juncea	cds.BjuA05g31910S	52.9412	38.8235
A4U43_C07F3440	asparagus_officinalis	ONK62396	50.8475	37.2881	brassica_juncea	cds.BjuB01g07130S	52.6316	38.5965
A4U43_C07F3440	asparagus_officinalis	ONK62396	54.8023	37.8531	avena_sativa_sang	AVESA.00010b.r2.3DG0567060.1.CDS.1	50	34.5361
A4U43_C07F3440	asparagus_officinalis	ONK62396	54.8023	37.8531	avena_sativa_sang	AVESA.00010b.r2.1DG0145960.1.CDS.1	49.7436	34.359
A4U43_C07F3440	asparagus_officinalis	ONK62396	54.8023	37.2881	lolium_perenne	cds.KYUSt_chr1.2810	50.7853	34.555
A4U43_C07F3440	asparagus_officinalis	ONK62396	53.6723	38.4181	oryza_rufipogon	ORUFI05G01610.1	49.7382	35.6021
A4U43_C07F3440	asparagus_officinalis	ONK62396	53.1073	37.2881	oryza_punctata	OPUNC05G01470.1	39.6624	27.8481
A4U43_C07F3440	asparagus_officinalis	ONK62396	54.8023	38.4181	secale_cereale	SECCE2Rv1G0099640.1.CDS.1	50	35.0515
A4U43_C07F3440	asparagus_officinalis	ONK62396	55.9322	38.4181	secale_cereale	SECCE1Rv1G0008700.1.CDS.1	51.0309	35.0515
A4U43_C07F3440	asparagus_officinalis	ONK62396	53.6723	38.4181	oryza_glaberrima	ORGLA05G0015300.1	49.7382	35.6021
A4U43_C07F3440	asparagus_officinalis	ONK62396	54.2373	38.9831	setaria_italica	KQL13123	46.1538	33.1731
A4U43_C07F3440	asparagus_officinalis	ONK62396	53.6723	38.4181	sorghum_bicolor	EES18932	48.2234	34.5178
A4U43_C07F3440	asparagus_officinalis	ONK62396	54.2373	38.9831	setaria_viridis	TKW24330	50	35.9375
A4U43_C07F3440	asparagus_officinalis	ONK62396	55.9322	38.4181	triticum_aestivum	TraesCS1A02G058300.1.cds1	51.0309	35.0515
A4U43_C07F3440	asparagus_officinalis	ONK62396	55.9322	38.4181	triticum_aestivum	TraesCS5B02G302100.1.cds1	51.0309	35.0515
A4U43_C07F3440	asparagus_officinalis	ONK62396	55.9322	38.4181	triticum_aestivum	TraesCS1B02G076400.1.cds1	51.0309	35.0515
A4U43_C07F3440	asparagus_officinalis	ONK62396	55.9322	38.4181	triticum_aestivum	TraesCS1D02G059100.1.cds1	51.0309	35.0515
A4U43_C07F3440	asparagus_officinalis	ONK62396	31.0734	15.8192	homo_sapiens	ENSP00000324100	21.0728	10.728
A4U43_C07F3440	asparagus_officinalis	ONK62396	56.4972	41.2429	ananas_comosus	Aco001520.1.mrna1.cds1	52.9101	38.6243
A4U43_C07F3440	asparagus_officinalis	ONK62396	53.6723	38.4181	oryza_glumipatula	OGLUM05G01560.1	49.7382	35.6021
A4U43_C07F3440	asparagus_officinalis	ONK62396	53.6723	38.4181	oryza_sativa	Os05t0121500-01	49.7382	35.6021
A4U43_C07F3440	asparagus_officinalis	ONK62396	54.2373	37.2881	brachypodium_distachyon	KQK07781	48	33
A4U43_C07F3440	asparagus_officinalis	ONK62396	55.9322	38.4181	aegilops_tauschii	AET1Gv20143500.2	50.7692	34.8718
A4U43_C07F3440	asparagus_officinalis	ONK62396	58.1921	44.6328	musa_acuminata	Ma09_p12280.1	54.2105	41.5789
A4U43_C07F3440	asparagus_officinalis	ONK62396	57.6271	43.5028	musa_acuminata	Ma03_p03800.1	54.2553	40.9574
A4U43_C07F3440	asparagus_officinalis	ONK62396	54.2373	38.4181	panicum_hallii	PUZ63773	48.4848	34.3434
A4U43_C07F3440	asparagus_officinalis	ONK62396	55.9322	38.4181	triticum_turgidum	TRITD1Av1G017600.1	51.0309	35.0515
A4U43_C07F3440	asparagus_officinalis	ONK62396	55.9322	38.4181	triticum_turgidum	TRITD5Bv1G164770.1	51.0309	35.0515
A4U43_C07F3440	asparagus_officinalis	ONK62396	50.8475	38.4181	arabidopsis_halleri	g05795.t1.cds1	52.9412	40
A4U43_C07F3440	asparagus_officinalis	ONK62396	50.8475	37.8531	eutrema_salsugineum	ESQ48791	53.2544	39.645
A4U43_C07F3440	asparagus_officinalis	ONK62396	53.6723	38.4181	oryza_indica	BGIOSGA018912-PA	49.7382	35.6021
A4U43_C07F3440	asparagus_officinalis	ONK62396	53.6723	38.4181	saccharum_spontaneum	Sspon.07G0014690-1A-mRNA-1.cds1	49.2228	35.2332
A4U43_C07F3440	asparagus_officinalis	ONK62396	54.2373	38.4181	echinochloa_crusgalli	scaffold40.491.cds	48.4848	34.3434
A4U43_C07F3440	asparagus_officinalis	ONK62396	53.6723	38.4181	echinochloa_crusgalli	scaffold13.164.cds	47.9798	34.3434
A4U43_C07F3440	asparagus_officinalis	ONK62396	53.6723	38.4181	echinochloa_crusgalli	scaffold242.181.cds	48.2234	34.5178
A4U43_C07F3440	asparagus_officinalis	ONK62396	43.5028	24.8588	ostreococcus_lucimarinus	ABO94575	36.3208	20.7547
A4U43_C07F3440	asparagus_officinalis	ONK62396	55.9322	38.4181	triticum_dicoccoides	TRIDC5BG048980.4	52.381	35.9788
A4U43_C07F3440	asparagus_officinalis	ONK62396	55.9322	38.4181	triticum_dicoccoides	TRIDC1AG007910.2	51.0309	35.0515
A4U43_C07F3440	asparagus_officinalis	ONK62396	55.9322	38.4181	triticum_dicoccoides	TRIDC1BG010020.2	51.0309	35.0515
A4U43_C07F3440	asparagus_officinalis	ONK62396	53.6723	37.8531	leersia_perrieri	LPERR05G01410.1	48.9691	34.5361
A4U43_C07F3440	asparagus_officinalis	ONK62396	50.8475	37.2881	brassica_oleracea	Bo5g133470.1	52.9412	38.8235
A4U43_C07F3440	asparagus_officinalis	ONK62396	51.4124	37.8531	brassica_oleracea	Bo1g139330.1	53.5294	39.4118
A4U43_C07F3440	asparagus_officinalis	ONK62396	50.8475	38.4181	arabidopsis_lyrata	scaffold_301418.1	52.9412	40
A4U43_C07F3440	asparagus_officinalis	ONK62396	50.8475	37.8531	camelina_sativa	Csa19g016610.1.cds1	52.0231	38.7283
A4U43_C07F3440	asparagus_officinalis	ONK62396	46.8927	35.0282	selaginella_moellendorffii	EFJ09278	57.6389	43.0556
A4U43_C07F3440	asparagus_officinalis	ONK62396	49.1525	37.2881	selaginella_moellendorffii	EFJ12741	59.589	45.2055
A4U43_C07F3440	asparagus_officinalis	ONK62396	53.6723	40.113	selaginella_moellendorffii	EFJ16912	52.4862	39.2265
A4U43_C07F3440	asparagus_officinalis	ONK62396	46.8927	35.0282	selaginella_moellendorffii	EFJ09323	57.6389	43.0556
A4U43_C07F3440	asparagus_officinalis	ONK62396	55.3672	41.2429	selaginella_moellendorffii	EFJ16033	51.3089	38.2199
A4U43_C07F3440	asparagus_officinalis	ONK62396	53.6723	38.4181	zea_mays	Zm00001eb355270_P002	48.4694	34.6939
A4U43_C07F3440	asparagus_officinalis	ONK62396	34.4633	20.339	galdieria_sulphuraria	EME27291	33.5165	19.7802
A4U43_C07F3440	asparagus_officinalis	ONK62396	35.5932	20.339	saccharomyces_cerevisiae	YDL202W	25.3012	14.4578
A4U43_C07F3440	asparagus_officinalis	ONK62396	53.1073	38.4181	eragrostis_tef	Et_9A_063195.CDS	35.8779	25.9542
A4U43_C07F3440	asparagus_officinalis	ONK62396	52.5424	37.8531	eragrostis_tef	Et_9B_063783.CDS1	47.9381	34.5361
A4U43_C07F3440	asparagus_officinalis	ONK62396	53.6723	38.4181	oryza_meridionalis	OMERI05G01610.1	48.9691	35.0515
A4U43_C07F3440	asparagus_officinalis	ONK62396	55.3672	35.5932	chara_braunii	GBG81475	29.9694	19.2661
A4U43_C07F3440	asparagus_officinalis	ONK62396	53.6723	38.4181	digitaria_exilis	Dexi3A01G0009580.1:cds	47.7387	34.1709
A4U43_C07F3440	asparagus_officinalis	ONK62396	53.6723	38.4181	digitaria_exilis	Dexi3B01G0009680.1:cds	47.7387	34.1709
A4U43_C07F3440	asparagus_officinalis	ONK62396	53.6723	38.4181	oryza_nivara	ONIVA05G01590.1	49.7382	35.6021

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression