RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	A4U43_C07F30360	Gene ID		Accession	-
Symbol		Alias	-	Full Name	uncharacterized protein
Status	Confidence	Length	5929 bases	Strand	Plus strand
Position	7 : 125913112 - 125919040	RNA binding domain	zf-C2H2_jaz , zf-met
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ONK64825	zf-C2H2_jaz	PF12171	3.1e-20	1
ONK64825	zf-C2H2_jaz	PF12171	3.1e-20	2
ONK64825	zf-met	PF12874	1.2e-30	3
ONK64825	zf-met	PF12874	1.2e-30	4
ONK64825	zf-met	PF12874	1.2e-30	5
ONK64825	zf-met	PF12874	1.2e-30	6

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID

Gene Model

Click here to download A4U43_C07F30360's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download A4U43_C07F30360's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C07F30360	asparagus_officinalis	ONK65073	52.514	34.0782	asparagus_officinalis	ONK64825	26.0388	16.8975

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C07F30360	asparagus_officinalis	ONK64825	36.8421	21.8837	medicago_truncatula	AET00966	25	14.8496
A4U43_C07F30360	asparagus_officinalis	ONK64825	29.3629	16.8975	helianthus_annuus	mRNA:HanXRQr2_Chr08g0357061	43.2653	24.898
A4U43_C07F30360	asparagus_officinalis	ONK64825	26.5928	12.4654	helianthus_annuus	mRNA:HanXRQr2_Chr14g0669291	34.2857	16.0714
A4U43_C07F30360	asparagus_officinalis	ONK64825	24.6537	10.8033	lactuca_sativa	cds-PLY89166.1	34.6304	15.1751
A4U43_C07F30360	asparagus_officinalis	ONK64825	41.8283	22.4377	lactuca_sativa	cds-PLY72620.1	37.0098	19.8529
A4U43_C07F30360	asparagus_officinalis	ONK64825	40.7202	22.7147	lactuca_sativa	cds-PLY72601.1	35.7664	19.9513
A4U43_C07F30360	asparagus_officinalis	ONK64825	37.6731	22.9917	lactuca_sativa	cds-PLY97994.1	28.5115	17.4004
A4U43_C07F30360	asparagus_officinalis	ONK64825	37.6731	21.8837	cynara_cardunculus	KVI06407	31.8501	18.5012
A4U43_C07F30360	asparagus_officinalis	ONK64825	42.1053	24.9307	cynara_cardunculus	KVH99262	36.3636	21.5311
A4U43_C07F30360	asparagus_officinalis	ONK64825	35.4571	20.2216	kalanchoe_fedtschenkoi	Kaladp0048s0077.1.v1.1	18.3644	10.4735
A4U43_C07F30360	asparagus_officinalis	ONK64825	39.3352	21.8837	corylus_avellana	Cav03g06530.t1	28.4	15.8

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression