RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	A4U43_C06F13470	Gene ID		Accession	-
Symbol		Alias	-	Full Name	uncharacterized protein
Status	Confidence	Length	1482 bases	Strand	Minus strand
Position	6 : 42601852 - 42603333	RNA binding domain	EF1G
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ONK66919	EF1G	PF00647	1.2e-06	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID

Gene Model

Click here to download A4U43_C06F13470's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download A4U43_C06F13470's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C06F13470	asparagus_officinalis	ONK79396	83	76	asparagus_officinalis	ONK66919	43.9153	40.2116
A4U43_C06F13470	asparagus_officinalis	ONK73419	91.1565	87.7551	asparagus_officinalis	ONK66919	70.8995	68.254
A4U43_C06F13470	asparagus_officinalis	ONK79395	65.5462	56.3025	asparagus_officinalis	ONK66919	41.2698	35.4497

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C06F13470	asparagus_officinalis	ONK66919	30.1587	23.2804	olea_europaea	OE9A078799C1	56.4356	43.5644

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression