RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	A4U43_C04F35170	Gene ID		Accession	-
Symbol		Alias	-	Full Name	uncharacterized protein
Status	Confidence	Length	1113 bases	Strand	Plus strand
Position	4 : 143997385 - 143998497	RNA binding domain	zf-met
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ONK73768	zf-met	PF12874	4.4e-14	1
ONK73768	zf-met	PF12874	4.4e-14	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID

Gene Model

Click here to download A4U43_C04F35170's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download A4U43_C04F35170's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C04F35170

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C04F35170	asparagus_officinalis	ONK73768	30	19.7297	papaver_somniferum	RZC53434	17.8457	11.7363
A4U43_C04F35170	asparagus_officinalis	ONK73768	17.027	10	theobroma_cacao	EOY24340	36.6279	21.5116
A4U43_C04F35170	asparagus_officinalis	ONK73768	10.2703	5.94595	manihot_esculenta	OAY56719	38.7755	22.449
A4U43_C04F35170	asparagus_officinalis	ONK73768	50.2703	35.1351	musa_acuminata	Ma05_p13290.1	32.4042	22.6481
A4U43_C04F35170	asparagus_officinalis	ONK73768	24.8649	17.5676	olea_europaea	OE9A011121C1	17.7264	12.5241
A4U43_C04F35170	asparagus_officinalis	ONK73768	32.1622	16.4865	nymphaea_colorata	NC4G0023520.1:cds	17.8144	9.13174
A4U43_C04F35170	asparagus_officinalis	ONK73768	15.6757	11.0811	pistacia_vera	cds-EVM0023747.1	22.2222	15.7088
A4U43_C04F35170	asparagus_officinalis	ONK73768	27.5676	17.027	corymbia_citriodora	cds-KAF8019324.1	18.9591	11.71
A4U43_C04F35170	asparagus_officinalis	ONK73768	25.6757	17.8378	fraxinus_excelsior	FRAEX38873_v2_000107350.1.cds	18.3398	12.7413
A4U43_C04F35170	asparagus_officinalis	ONK73768	17.5676	12.4324	quercus_suber	cds-POF05567.1	19.0058	13.4503

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression