Description

Ensembl ID A4U43_C04F34840 Gene ID Accession -
Symbol Alias - Full Name uncharacterized protein
Status Confidence Length 30218 bases Strand Plus strand
Position 4 : 142984315 - 143014532 RNA binding domain RNA_pol_Rpb2_1 , RNA_pol_Rpa2_4 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ONK73747 RNA_pol_Rpb2_1 PF04563 3.4e-12 1
ONK73747 RNA_pol_Rpa2_4 PF06883 1.7e-17 2
ONK73747 RNA_pol_Rpb2_3 PF04565 1.3e-26 3
ONK73747 RNA_pol_Rpb2_7 PF04560 5.3e-22 4
ONK73747 RNA_pol_Rpb2_2 PF04561 1.4e-08 5
ONK73747 RNA_pol_Rpb2_6 PF00562 1.7e-113 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
A4U43_C04F34840asparagus_officinalisONK7363336.319224.3485asparagus_officinalisONK7374741.030427.5069
A4U43_C04F34840asparagus_officinalisONK8147534.37519.8276asparagus_officinalisONK7374729.346816.9273
A4U43_C04F34840asparagus_officinalisONK7394238.883225.3807asparagus_officinalisONK7374735.234622.9991
A4U43_C04F34840asparagus_officinalisONK8147445.789527.8947asparagus_officinalisONK737478.003684.8758

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
A4U43_C04F34840asparagus_officinalisONK7374754.737838.6385chondrus_crispusCDF3391347.752833.7079
A4U43_C04F34840asparagus_officinalisONK7374753.541939.5584chlamydomonas_reinhardtiiPNW8054855.587441.0697
A4U43_C04F34840asparagus_officinalisONK737475.611783.67985physcomitrium_patensPAC:32922743.CDS.141.496627.2109
A4U43_C04F34840asparagus_officinalisONK7374770.929254.6458marchantia_polymorphaPTQ4880964.844449.9579
A4U43_C04F34840asparagus_officinalisONK7374712.143510.2116marchantia_polymorphaPTQ2624872.928261.326
A4U43_C04F34840asparagus_officinalisONK7374777.736965.8694papaver_somniferumRZC7767675.716864.1577
A4U43_C04F34840asparagus_officinalisONK7374779.944866.6053cannabis_sativa_femalecds.evm.model.04.1978.642565.5204
A4U43_C04F34840asparagus_officinalisONK7374782.520768.6293ficus_caricaFCD_00022316-RA:cds76.601263.7062
A4U43_C04F34840asparagus_officinalisONK7374782.520768.6293ficus_caricaFCD_00035519-RA:cds76.601263.7062
A4U43_C04F34840asparagus_officinalisONK7374780.588868.2613beta_vulgarisKMT1698274.807963.3646
A4U43_C04F34840asparagus_officinalisONK7374778.104965.1334citrullus_lanatusCla97C08G153700.182.910269.1406
A4U43_C04F34840asparagus_officinalisONK7374781.968767.9853theobroma_cacaoEOY1964775.508562.6271
A4U43_C04F34840asparagus_officinalisONK7374781.692767.8933cucumis_meloMELO3C011383.2.175.703362.9156
A4U43_C04F34840asparagus_officinalisONK7374780.864866.8813cucumis_sativusKGN4775670.151658.0208
A4U43_C04F34840asparagus_officinalisONK7374780.588866.3293populus_trichocarpaPotri.001G030750.1.v4.174.680361.4663
A4U43_C04F34840asparagus_officinalisONK7374779.208864.2134arabidopsis_thalianaAT1G29940.173.0959.253
A4U43_C04F34840asparagus_officinalisONK7374779.024863.5695brassica_napusCDY4319972.550758.3615
A4U43_C04F34840asparagus_officinalisONK7374778.932863.5695brassica_napusCDX9815972.466258.3615
A4U43_C04F34840asparagus_officinalisONK7374717.019313.9834brassica_napusCDY4319682.589367.8571
A4U43_C04F34840asparagus_officinalisONK7374779.116863.7534brassica_junceacds.BjuA07g09140S73.005158.8285
A4U43_C04F34840asparagus_officinalisONK7374714.351411.7755brassica_junceacds.BjuA07g09170S81.675467.0157
A4U43_C04F34840asparagus_officinalisONK7374778.564963.8454brassica_junceacds.BjuB03g31090S71.764758.3193
A4U43_C04F34840asparagus_officinalisONK7374718.675315.8234prunus_persicaONH9734475.746364.1791
A4U43_C04F34840asparagus_officinalisONK7374725.20720.5152prunus_persicaONH9608971.354258.0729
A4U43_C04F34840asparagus_officinalisONK7374780.496867.3413prunus_persicaONI3619773.90261.8243
A4U43_C04F34840asparagus_officinalisONK7374716.651314.0754prunus_persicaONH9800382.648469.863
A4U43_C04F34840asparagus_officinalisONK7374711.867510.1196prunus_dulcisVVA1006680.62568.75
A4U43_C04F34840asparagus_officinalisONK7374780.496867.2493prunus_dulcisVVA3207173.90261.7399
A4U43_C04F34840asparagus_officinalisONK7374779.576867.8933malus_domestica_goldenmRNA:MD08G019750074.058263.1849
A4U43_C04F34840asparagus_officinalisONK7374780.312867.8013medicago_truncatulaAES9208173.299861.8808
A4U43_C04F34840asparagus_officinalisONK7374781.416767.8013lupinus_angustifoliusOIW0812075.319162.7234
A4U43_C04F34840asparagus_officinalisONK7374781.692767.8013phaseolus_vulgarisESW0569075.254262.4576
A4U43_C04F34840asparagus_officinalisONK7374781.876768.4453glycine_maxKRH0474175.744763.3191
A4U43_C04F34840asparagus_officinalisONK7374782.152768.9972glycine_maxKRH206667663.8298
A4U43_C04F34840asparagus_officinalisONK7374757.681749.494pisum_sativumPsat2g146640.1.cds73.67863.2197
A4U43_C04F34840asparagus_officinalisONK7374781.876767.7093vigna_unguiculataVigun11g014200.1.v1.275.744762.6383
A4U43_C04F34840asparagus_officinalisONK7374782.060767.8933vigna_angularisKOM3645575.914962.8085
A4U43_C04F34840asparagus_officinalisONK7374781.140869.2732sesamum_indicumSIN_1008218.t80.036368.3303
A4U43_C04F34840asparagus_officinalisONK7374780.772868.5373capsicum_annuumPHT9461176.815465.1794
A4U43_C04F34840asparagus_officinalisONK7374780.496866.4213helianthus_annuusmRNA:HanXRQr2_Chr04g017893172.85660.1166
A4U43_C04F34840asparagus_officinalisONK7374779.668866.6053lactuca_sativacds-PLY74530.175.633263.2314
A4U43_C04F34840asparagus_officinalisONK7374781.048868.9052solanum_lycopersicumSolyc01g086710.3.174.408863.2601
A4U43_C04F34840asparagus_officinalisONK7374782.888769.8252manihot_esculentaOAY5335476.420764.3766
A4U43_C04F34840asparagus_officinalisONK7374720.515217.9393avena_sativa_sangAVESA.00010b.r2.1AG0063660.1.CDS84.150973.5849
A4U43_C04F34840asparagus_officinalisONK7374720.515217.9393avena_sativa_sangAVESA.00010b.r2.1DG0182210.1.CDS84.150973.5849
A4U43_C04F34840asparagus_officinalisONK7374781.600768.3533avena_sativa_sangAVESA.00010b.r2.1CG0091690.1.CDS74.978962.8064
A4U43_C04F34840asparagus_officinalisONK7374779.852866.8813lolium_perennecds.KYUSt_chr1.1918471.617259.9835
A4U43_C04F34840asparagus_officinalisONK7374782.428768.9052oryza_brachyanthaOB10G21550.177.174964.5134
A4U43_C04F34840asparagus_officinalisONK7374777.276963.5695oryza_rufipogonORUFI10G15380.176.923163.2784
A4U43_C04F34840asparagus_officinalisONK7374778.932866.0534oryza_punctataOPUNC10G12900.145.015737.6705
A4U43_C04F34840asparagus_officinalisONK7374781.600768.3533avena_sativa_ot3098cds.AVESA.00001b.r3.1Cg0001240.374.663362.5421
A4U43_C04F34840asparagus_officinalisONK7374781.416768.2613avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0000602.274.809862.7219
A4U43_C04F34840asparagus_officinalisONK7374781.508768.3533avena_sativa_ot3098cds.AVESA.00001b.r3.1Ag0000634.274.204462.2278
A4U43_C04F34840asparagus_officinalisONK7374781.140867.8933secale_cerealeSECCE1Rv1G0026170.179.459566.4865
A4U43_C04F34840asparagus_officinalisONK7374775.62161.4535oryza_longistaminataKN539297.1_FGP01349.818240.4848
A4U43_C04F34840asparagus_officinalisONK7374715.271413.3395setaria_italicaKQK8852586.458375.5208
A4U43_C04F34840asparagus_officinalisONK7374783.348769.2732sorghum_bicolorEES0439377.502164.414
A4U43_C04F34840asparagus_officinalisONK7374783.072769.8252setaria_viridisTKV9312176.590364.3766
A4U43_C04F34840asparagus_officinalisONK7374781.784768.1693triticum_aestivumTraesCS1A02G163400.274.894762.4263
A4U43_C04F34840asparagus_officinalisONK7374781.784768.2613triticum_aestivumTraesCS1D02G160000.174.894762.5105
A4U43_C04F34840asparagus_officinalisONK7374781.692768.1693triticum_aestivumTraesCS1B02G179900.170.813459.0909
A4U43_C04F34840asparagus_officinalisONK7374759.061642.5023homo_sapiensENSP0000026333156.563940.7048
A4U43_C04F34840asparagus_officinalisONK7374782.060771.5731ananas_comosusAco007652.1.mrna184.952474.0952
A4U43_C04F34840asparagus_officinalisONK7374780.864867.5253triticum_urartuTuG1812G0100001813.01.T0279.189266.1261
A4U43_C04F34840asparagus_officinalisONK7374777.276963.5695oryza_glumipatulaOGLUM10G14320.176.923163.2784
A4U43_C04F34840asparagus_officinalisONK7374780.772867.8933ipomoea_trilobaitb09g15600.t174.280962.4365
A4U43_C04F34840asparagus_officinalisONK7374756.485739.0064drosophila_melanogasterFBpp007771454.384437.5554
A4U43_C04F34840asparagus_officinalisONK7374755.105844.6182oryza_sativaOs10t0495600-0174.781560.5493
A4U43_C04F34840asparagus_officinalisONK7374780.404867.1573prunus_aviumPav_sc0001196.1_g580.1.mk:mrna73.817661.6554
A4U43_C04F34840asparagus_officinalisONK7374782.244768.4453brachypodium_distachyonPNT6764074.686762.1554
A4U43_C04F34840asparagus_officinalisONK7374781.876768.3533aegilops_tauschiiAET1Gv20420300.174.978962.5948
A4U43_C04F34840asparagus_officinalisONK7374779.116866.5133chenopodium_quinoaAUR62029096-RA:cds75.971763.8693
A4U43_C04F34840asparagus_officinalisONK7374779.944864.5814arabis_alpinaKFK4481973.831859.6432
A4U43_C04F34840asparagus_officinalisONK7374780.956868.0773rosa_chinensisPRQ5664974.576362.7119
A4U43_C04F34840asparagus_officinalisONK7374780.864869.1812nicotiana_attenuataOIT0320871.990261.5889
A4U43_C04F34840asparagus_officinalisONK7374783.072770.1012quercus_lobataQL04p021099:mrna70.76859.7179
A4U43_C04F34840asparagus_officinalisONK7374726.21920.2392quercus_lobataQL93p0049_0007:mrna57.692344.5344
A4U43_C04F34840asparagus_officinalisONK7374788.040577.5529musa_acuminataMa08_p23670.181.864872.1129
A4U43_C04F34840asparagus_officinalisONK7374753.265944.5262olea_europaeaOE9A079854C370.782459.1687
A4U43_C04F34840asparagus_officinalisONK7374768.077355.6578olea_europaeaOE9A017948C269.418456.7542
A4U43_C04F34840asparagus_officinalisONK7374783.164769.3652panicum_halliiPUZ3845476.480563.7902
A4U43_C04F34840asparagus_officinalisONK7374777.552964.8574cynara_cardunculusKVI1138474.077361.9508
A4U43_C04F34840asparagus_officinalisONK7374776.816962.8335nymphaea_colorataNC1G0288590.1:cds66.960754.7715
A4U43_C04F34840asparagus_officinalisONK7374785.832673.1371dioscorea_rotundataDRNTG_05264.180.085868.2403
A4U43_C04F34840asparagus_officinalisONK7374781.692768.1693triticum_turgidumTRITD1Bv1G105900.574.747562.3737
A4U43_C04F34840asparagus_officinalisONK7374781.784768.1693triticum_turgidumTRITD1Av1G105410.374.894762.4263
A4U43_C04F34840asparagus_officinalisONK7374779.116864.2134arabidopsis_hallerig26327.t172.390658.7542
A4U43_C04F34840asparagus_officinalisONK7374780.220865.2254eutrema_salsugineumESQ3388573.710959.9324
A4U43_C04F34840asparagus_officinalisONK7374779.392863.3855eutrema_salsugineumESQ3388673.073758.3404
A4U43_C04F34840asparagus_officinalisONK7374750.78243.3303pistacia_veracds-EVM0015223.179.538967.8674
A4U43_C04F34840asparagus_officinalisONK7374781.324767.6173oryza_indicaBGIOSGA031619-PA81.399667.6796
A4U43_C04F34840asparagus_officinalisONK7374779.208866.7893kalanchoe_fedtschenkoiKaladp0095s0372.1.v1.172.413861.0597
A4U43_C04F34840asparagus_officinalisONK7374721.343118.5833saccharum_spontaneumSspon.01G0020480-2B-mRNA-1:cds70.94861.7737
A4U43_C04F34840asparagus_officinalisONK7374728.794825.115saccharum_spontaneumSspon.01G0020480-1A-mRNA-1:cds79.643869.4657
A4U43_C04F34840asparagus_officinalisONK7374782.980770.3772corymbia_citriodoracds-KAF8022183.176.831365.1618
A4U43_C04F34840asparagus_officinalisONK7374780.128868.5373citrus_clementinaESR4136680.499168.854
A4U43_C04F34840asparagus_officinalisONK7374757.129739.0064caenorhabditis_elegansF14B4.3.155.10237.622
A4U43_C04F34840asparagus_officinalisONK7374721.435117.2953fraxinus_excelsiorFRAEX38873_v2_000046510.1.cds58.690247.3552
A4U43_C04F34840asparagus_officinalisONK7374781.140868.8132fraxinus_excelsiorFRAEX38873_v2_000071550.1.cds74.430463.1224
A4U43_C04F34840asparagus_officinalisONK7374783.072769.1812echinochloa_crusgalliscaffold112.311.cds71.780659.7774
A4U43_C04F34840asparagus_officinalisONK7374718.951216.0074echinochloa_crusgalliscaffold268.1.cds85.833372.5
A4U43_C04F34840asparagus_officinalisONK7374782.796769.0892echinochloa_crusgalliscaffold27.642.cds75.757663.2155
A4U43_C04F34840asparagus_officinalisONK7374757.405740.9384ostreococcus_lucimarinusABO9469854.497838.8646
A4U43_C04F34840asparagus_officinalisONK7374781.600768.0773triticum_dicoccoidesTRIDC1BG029990.271.880159.9676
A4U43_C04F34840asparagus_officinalisONK7374781.784768.1693triticum_dicoccoidesTRIDC1AG025010.174.894762.4263
A4U43_C04F34840asparagus_officinalisONK7374778.932866.6973trifolium_pratenseTp57577_TGAC_v2_mRNA882963.934454.0238
A4U43_C04F34840asparagus_officinalisONK7374716.283313.4315brassica_rapa_ro18A07g504580.1_BraROA.179.729765.7658
A4U43_C04F34840asparagus_officinalisONK7374779.116863.6615brassica_rapa_ro18A07p014810.1_BraROA.170.957157.0957
A4U43_C04F34840asparagus_officinalisONK7374777.828964.4894leersia_perrieriLPERR10G10880.177.472564.1941
A4U43_C04F34840asparagus_officinalisONK7374782.428770.3772eucalyptus_grandisKCW6588176.385365.2174
A4U43_C04F34840asparagus_officinalisONK7374782.060770.8372actinidia_chinensisPSS0991370.625560.966
A4U43_C04F34840asparagus_officinalisONK7374779.024863.6615brassica_oleraceaBo7g044890.172.306458.2492
A4U43_C04F34840asparagus_officinalisONK7374783.900672.0331vitis_viniferaVitvi13g01355_P00177.683166.6951
A4U43_C04F34840asparagus_officinalisONK7374778.932864.3054arabidopsis_lyratafgenesh1_pm.C_scaffold_100241972.222258.8384
A4U43_C04F34840asparagus_officinalisONK7374777.276963.5695oryza_barthiiOBART10G14420.176.923163.2784
A4U43_C04F34840asparagus_officinalisONK7374779.944864.9494camelina_sativaCsa17g042870.173.025259.3277
A4U43_C04F34840asparagus_officinalisONK7374779.484864.5814camelina_sativaCsa03g033100.170.64657.3998
A4U43_C04F34840asparagus_officinalisONK7374779.392864.6734camelina_sativaCsa14g037490.163.643151.8437
A4U43_C04F34840asparagus_officinalisONK7374778.380966.1454daucus_carotaKZM9614070.471559.4706
A4U43_C04F34840asparagus_officinalisONK7374783.716770.0092eragrostis_curvulaTVU3218574.407262.224
A4U43_C04F34840asparagus_officinalisONK7374726.862923.3671eragrostis_curvulaTVU0156568.384159.4848
A4U43_C04F34840asparagus_officinalisONK7374780.312867.8933coffea_canephoraCDP0793872.208461.0422
A4U43_C04F34840asparagus_officinalisONK7374768.997252.1619selaginella_moellendorffiiEFJ3514666.607550.3552
A4U43_C04F34840asparagus_officinalisONK7374771.941154.0018selaginella_moellendorffiiEFJ0445766.723550.0853
A4U43_C04F34840asparagus_officinalisONK7374748.482138.0865selaginella_moellendorffiiEFJ2409676.156159.8266
A4U43_C04F34840asparagus_officinalisONK7374753.357936.7985cyanidioschyzon_merolaeCMS114CT49.361734.0426
A4U43_C04F34840asparagus_officinalisONK7374783.164768.8132zea_maysZm00001eb044710_P00176.740263.4975
A4U43_C04F34840asparagus_officinalisONK7374744.526237.3505amborella_trichopodaERN0473474.347262.3656
A4U43_C04F34840asparagus_officinalisONK7374726.21921.9871quercus_subercds-POE71336.180.965967.8977
A4U43_C04F34840asparagus_officinalisONK7374779.668868.1693quercus_subercds-POE55406.172.166761.75
A4U43_C04F34840asparagus_officinalisONK7374755.749839.0984galdieria_sulphurariaEME3271149.631534.8075
A4U43_C04F34840asparagus_officinalisONK7374758.877642.4103saccharomyces_cerevisiaeYPR010C53.200338.3209
A4U43_C04F34840asparagus_officinalisONK7374773.321160.5336eragrostis_tefEt_1B_011861.CDS78.599664.8915
A4U43_C04F34840asparagus_officinalisONK7374781.140868.4453eragrostis_tefEt_1A_007062.CDS79.891367.3913
A4U43_C04F34840asparagus_officinalisONK7374782.152770.0092juglans_regiacds.Jr16_07280_p176.064764.8211
A4U43_C04F34840asparagus_officinalisONK7374780.312867.0653oryza_meridionalisOMERI10G11250.177.66964.8577
A4U43_C04F34840asparagus_officinalisONK7374713.431511.1316corylus_avellanaCav01g31880.t171.921259.6059
A4U43_C04F34840asparagus_officinalisONK7374778.748865.5934corchorus_capsularisOMO5131275.819363.1532
A4U43_C04F34840asparagus_officinalisONK7374781.692767.2493gossypium_raimondiiKJB7317775.38262.0543
A4U43_C04F34840asparagus_officinalisONK7374760.625647.4701chara_brauniiGBG8444767.451452.8147
A4U43_C04F34840asparagus_officinalisONK7374782.336769.2732digitaria_exilisDexi9B01G0018990.1:cds79.063666.5194
A4U43_C04F34840asparagus_officinalisONK7374782.520769.2732digitaria_exilisDexi9A01G0019430.1:cds76.732264.414
A4U43_C04F34840asparagus_officinalisONK7374778.564965.5934vigna_radiataVradi0268s00090.176.591963.9462
A4U43_C04F34840asparagus_officinalisONK7374780.220866.4213oryza_nivaraONIVA10G16280.177.511164.1778

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression