RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	A4U43_C04F31300	Gene ID		Accession	-
Symbol		Alias	-	Full Name	uncharacterized protein
Status	Confidence	Length	5371 bases	Strand	Plus strand
Position	4 : 131259344 - 131264714	RNA binding domain	EF1G
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ONK73419	EF1G	PF00647	7.8e-07	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID

Gene Model

Click here to download A4U43_C04F31300's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download A4U43_C04F31300's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C04F31300	asparagus_officinalis	ONK79396	80	75	asparagus_officinalis	ONK73419	54.4218	51.0204
A4U43_C04F31300	asparagus_officinalis	ONK66919	70.8995	68.254	asparagus_officinalis	ONK73419	91.1565	87.7551
A4U43_C04F31300	asparagus_officinalis	ONK79395	54.6218	53.7815	asparagus_officinalis	ONK73419	44.2177	43.5374

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C04F31300	asparagus_officinalis	ONK73419	36.0544	25.8503	olea_europaea	OE9A078799C1	52.4752	37.6238

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression