RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	A4U43_C04F27320	Gene ID		Accession	-
Symbol		Alias	-	Full Name	uncharacterized protein
Status	Confidence	Length	959 bases	Strand	Plus strand
Position	4 : 110099468 - 110100426	RNA binding domain	zf-met
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ONK73106	zf-met	PF12874	9.8e-06	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID

Gene Model

Click here to download A4U43_C04F27320's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download A4U43_C04F27320's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C04F27320

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C04F27320	asparagus_officinalis	ONK73106	36.6782	28.7197	avena_sativa_sang	AVESA.00010b.r2.6CG1082260.1.CDS.1	50.4762	39.5238
A4U43_C04F27320	asparagus_officinalis	ONK73106	34.6021	27.6817	triticum_turgidum	TRITD2Bv1G204050.1	48.5437	38.835
A4U43_C04F27320	asparagus_officinalis	ONK73106	22.1453	13.1488	echinochloa_crusgalli	scaffold4.884.cds	26.3374	15.6379
A4U43_C04F27320	asparagus_officinalis	ONK73106	13.8408	10.7266	triticum_dicoccoides	TRIDC2AG059640.1	41.2371	31.9588

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression