RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	A4U43_C04F21580	Gene ID		Accession	-
Symbol		Alias	-	Full Name	uncharacterized protein
Status	Confidence	Length	2794 bases	Strand	Minus strand
Position	4 : 72719929 - 72722722	RNA binding domain	zf-met
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ONK72648	zf-met	PF12874	1.6e-11	1
ONK72648	zf-met	PF12874	1.6e-11	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID

Gene Model

Click here to download A4U43_C04F21580's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download A4U43_C04F21580's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C04F21580

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C04F21580	asparagus_officinalis	ONK72648	47.234	27.6596	ananas_comosus	Aco007688.1.mrna1	48.2609	28.2609
A4U43_C04F21580	asparagus_officinalis	ONK72648	50.2128	34.4681	dioscorea_rotundata	DRNTG_02104.1	53.1532	36.4865

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression