RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	A4U43_C04F14610	Gene ID		Accession	-
Symbol		Alias	-	Full Name	uncharacterized protein
Status	Confidence	Length	10006 bases	Strand	Plus strand
Position	4 : 42262309 - 42272314	RNA binding domain	Sua5_yciO_yrdC
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ONK72000	Sua5_yciO_yrdC	PF01300	3.8e-27	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID

Gene Model

Click here to download A4U43_C04F14610's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download A4U43_C04F14610's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C04F14610

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C04F14610	asparagus_officinalis	ONK72000	38.8199	27.9503	chlamydomonas_reinhardtii	PNW88136	44.964	32.3741
A4U43_C04F14610	asparagus_officinalis	ONK72000	55.2795	40.9938	physcomitrium_patens	Pp3c2_22020V3.2	44.0594	32.6733
A4U43_C04F14610	asparagus_officinalis	ONK72000	56.8323	47.205	papaver_somniferum	RZC60620	60	49.8361
A4U43_C04F14610	asparagus_officinalis	ONK72000	57.4534	46.8944	papaver_somniferum	RZC59342	60.0649	49.026
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.0062	49.0683	ficus_carica	FCD_00018411-RA:cds	59.5611	49.5298
A4U43_C04F14610	asparagus_officinalis	ONK72000	55.2795	45.9627	beta_vulgaris	KMT09098	56.869	47.2843
A4U43_C04F14610	asparagus_officinalis	ONK72000	56.8323	45.0311	citrullus_lanatus	Cla97C05G095070.1	59.0323	46.7742
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.9379	49.3789	theobroma_cacao	EOY02798	54.8295	45.1705
A4U43_C04F14610	asparagus_officinalis	ONK72000	55.2795	44.4099	cucumis_melo	MELO3C014888.2.1	57.6052	46.2783
A4U43_C04F14610	asparagus_officinalis	ONK72000	54.9689	44.4099	cucumis_sativus	KGN58172	57.2816	46.2783
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.9379	50.3106	populus_trichocarpa	Potri.001G330100.2.v4.1	61.6613	51.7572
A4U43_C04F14610	asparagus_officinalis	ONK72000	57.4534	45.3416	arabidopsis_thaliana	AT3G01920.2	55.3892	43.7126
A4U43_C04F14610	asparagus_officinalis	ONK72000	56.5217	45.3416	brassica_napus	CDX83062	61.6949	49.4915
A4U43_C04F14610	asparagus_officinalis	ONK72000	56.2112	44.7205	brassica_napus	CDY66120	61.3559	48.8136
A4U43_C04F14610	asparagus_officinalis	ONK72000	56.8323	45.0311	brassica_juncea	cds.BjuA01g22820S	62.0339	49.1525
A4U43_C04F14610	asparagus_officinalis	ONK72000	55.9006	43.7888	brassica_juncea	cds.BjuB05g22790S	61.0169	47.7966
A4U43_C04F14610	asparagus_officinalis	ONK72000	58.6957	48.1366	prunus_persica	ONI19941	59.2477	48.5893
A4U43_C04F14610	asparagus_officinalis	ONK72000	58.6957	48.1366	prunus_dulcis	VVA26797	59.2477	48.5893
A4U43_C04F14610	asparagus_officinalis	ONK72000	57.764	43.7888	cajanus_cajan	C.cajan_05204.t	60.3896	45.7792
A4U43_C04F14610	asparagus_officinalis	ONK72000	58.0745	48.4472	malus_domestica_golden	mRNA:MD09G0009700	60.7143	50.6493
A4U43_C04F14610	asparagus_officinalis	ONK72000	29.8137	23.2919	medicago_truncatula	KEH22231	51.8919	40.5405
A4U43_C04F14610	asparagus_officinalis	ONK72000	54.0373	42.236	lupinus_angustifolius	OIW02972	56.6775	44.2997
A4U43_C04F14610	asparagus_officinalis	ONK72000	54.0373	42.236	lupinus_angustifolius	OIW02969	56.6775	44.2997
A4U43_C04F14610	asparagus_officinalis	ONK72000	52.795	38.1988	phaseolus_vulgaris	ESW33721	54.8387	39.6774
A4U43_C04F14610	asparagus_officinalis	ONK72000	56.8323	44.0994	glycine_max	KRG94526	59.4156	46.1039
A4U43_C04F14610	asparagus_officinalis	ONK72000	49.6894	38.1988	glycine_max	KRH06942	57.1429	43.9286
A4U43_C04F14610	asparagus_officinalis	ONK72000	55.9006	42.5466	pisum_sativum	Psat3g163920.1.cds	60.8108	46.2838
A4U43_C04F14610	asparagus_officinalis	ONK72000	56.8323	44.0994	vigna_unguiculata	Vigun01g069700.1.v1.2	59.6091	46.2541
A4U43_C04F14610	asparagus_officinalis	ONK72000	56.8323	44.0994	vigna_angularis	KOM38415	59.6091	46.2541
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.6273	50	sesamum_indicum	SIN_1003984.t	59.0769	49.5385
A4U43_C04F14610	asparagus_officinalis	ONK72000	58.3851	49.6894	capsicum_annuum	PHT92046	61.4379	52.2876
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.0062	46.8944	helianthus_annuus	mRNA:HanXRQr2_Chr14g0654581	57.7508	45.8967
A4U43_C04F14610	asparagus_officinalis	ONK72000	57.764	44.7205	lactuca_sativa	cds-PLY96790.1	59.6154	46.1538
A4U43_C04F14610	asparagus_officinalis	ONK72000	44.7205	40.6832	solanum_tuberosum	PGSC0003DMT400052221	82.2857	74.8571
A4U43_C04F14610	asparagus_officinalis	ONK72000	57.764	47.8261	solanum_lycopersicum	Solyc02g094150.3.1	60.9836	50.4918
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.3168	48.1366	manihot_esculenta	OAY29646	61.0224	49.5208
A4U43_C04F14610	asparagus_officinalis	ONK72000	57.764	48.4472	avena_sativa_sang	AVESA.00010b.r2.7AG1219730.1.CDS	62.8378	52.7027
A4U43_C04F14610	asparagus_officinalis	ONK72000	57.764	48.4472	avena_sativa_sang	AVESA.00010b.r2.7DG1388680.1.CDS	62.8378	52.7027
A4U43_C04F14610	asparagus_officinalis	ONK72000	58.0745	48.7578	avena_sativa_sang	AVESA.00010b.r2.5CG0930040.1.CDS	63.1757	53.0405
A4U43_C04F14610	asparagus_officinalis	ONK72000	50.6211	42.8571	lolium_perenne	cds.KYUSt_chr7.25912	70.8696	60
A4U43_C04F14610	asparagus_officinalis	ONK72000	60.2484	50.6211	oryza_brachyantha	OB08G28310.1	61.7834	51.9108
A4U43_C04F14610	asparagus_officinalis	ONK72000	53.7267	42.8571	oryza_rufipogon	ORUFI08G24020.1	55.2716	44.0895
A4U43_C04F14610	asparagus_officinalis	ONK72000	53.4161	43.1677	oryza_punctata	OPUNC08G19640.1	54.9521	44.4089
A4U43_C04F14610	asparagus_officinalis	ONK72000	58.0745	49.0683	secale_cereale	SECCE4Rv1G0242730.1	61.3115	51.8033
A4U43_C04F14610	asparagus_officinalis	ONK72000	61.4907	52.1739	oryza_glaberrima	ORGLA08G0230300.1	63.2588	53.6741
A4U43_C04F14610	asparagus_officinalis	ONK72000	58.3851	48.7578	oryza_longistaminata	KN539975.1_FGP004	56.9697	47.5758
A4U43_C04F14610	asparagus_officinalis	ONK72000	61.1801	49.6894	setaria_italica	KQL02647	40.2041	32.6531
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.3168	49.0683	sorghum_bicolor	EES15311	61.2179	50.641
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.6273	49.0683	setaria_viridis	TKW11389	62.5407	51.4658
A4U43_C04F14610	asparagus_officinalis	ONK72000	57.764	48.7578	triticum_aestivum	TraesCS7A02G260400.3	57.0552	48.1595
A4U43_C04F14610	asparagus_officinalis	ONK72000	60.2484	50	triticum_aestivum	TraesCS7D02G261400.1	58.0838	48.2036
A4U43_C04F14610	asparagus_officinalis	ONK72000	57.764	49.3789	triticum_aestivum	TraesCS7B02G158400.1	61.1842	52.3026
A4U43_C04F14610	asparagus_officinalis	ONK72000	48.7578	40.9938	ananas_comosus	Aco004605.1.mrna1	52.5084	44.1472
A4U43_C04F14610	asparagus_officinalis	ONK72000	57.764	49.0683	triticum_urartu	TuG1812G0700002754.01.T01	60.9836	51.8033
A4U43_C04F14610	asparagus_officinalis	ONK72000	53.7267	42.8571	oryza_glumipatula	OGLUM08G22800.1	45.7672	36.5079
A4U43_C04F14610	asparagus_officinalis	ONK72000	58.3851	48.7578	ipomoea_triloba	itb03g00110.t1	61.039	50.974
A4U43_C04F14610	asparagus_officinalis	ONK72000	61.1801	51.8634	oryza_sativa	Os08t0531300-01	62.9393	53.3546
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.0062	48.4472	brachypodium_distachyon	KQJ99050	61.4887	50.4854
A4U43_C04F14610	asparagus_officinalis	ONK72000	60.2484	50	aegilops_tauschii	AET7Gv20637700.2	58.2583	48.3483
A4U43_C04F14610	asparagus_officinalis	ONK72000	55.9006	45.9627	chenopodium_quinoa	AUR62003516-RA:cds	54.7112	44.9848
A4U43_C04F14610	asparagus_officinalis	ONK72000	54.9689	43.7888	arabis_alpina	KFK37648	64.5985	51.4599
A4U43_C04F14610	asparagus_officinalis	ONK72000	57.1429	45.6522	rosa_chinensis	PRQ54263	57.3209	45.7944
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.3168	49.3789	nicotiana_attenuata	OIT06074	62.8289	52.3026
A4U43_C04F14610	asparagus_officinalis	ONK72000	41.6149	36.9565	quercus_lobata	QL02p071425:mrna	73.224	65.0273
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.0062	49.3789	musa_acuminata	Ma06_p01340.2	61.6883	51.6234
A4U43_C04F14610	asparagus_officinalis	ONK72000	60.559	50.9317	olea_europaea	OE9A101286C1	63.7255	53.5948
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.9379	50	panicum_hallii	PUZ52381	62.4595	52.1036
A4U43_C04F14610	asparagus_officinalis	ONK72000	57.4534	43.4783	cynara_cardunculus	KVI09261	53.6232	40.5797
A4U43_C04F14610	asparagus_officinalis	ONK72000	42.236	37.2671	nymphaea_colorata	NC7G0235110.1:cds	79.5322	70.1754
A4U43_C04F14610	asparagus_officinalis	ONK72000	60.8696	50.6211	dioscorea_rotundata	DRNTG_31678.2	66.4407	55.2542
A4U43_C04F14610	asparagus_officinalis	ONK72000	57.764	49.3789	triticum_turgidum	TRITD7Bv1G077080.1	61.1842	52.3026
A4U43_C04F14610	asparagus_officinalis	ONK72000	57.764	48.7578	triticum_turgidum	TRITD7Av1G103040.6	57.0552	48.1595
A4U43_C04F14610	asparagus_officinalis	ONK72000	57.764	46.8944	arabidopsis_halleri	g02671.t1	60.9836	49.5082
A4U43_C04F14610	asparagus_officinalis	ONK72000	55.2795	44.7205	eutrema_salsugineum	ESQ46318	57.0513	46.1538
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.6273	49.3789	pistacia_vera	cds-EVM0012748.1	64.6465	53.5354
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.9379	49.3789	pistacia_vera	cds-EVM0011762.1	64.9832	53.5354
A4U43_C04F14610	asparagus_officinalis	ONK72000	61.4907	52.1739	oryza_indica	BGIOSGA029050-PA	63.0573	53.5032
A4U43_C04F14610	asparagus_officinalis	ONK72000	54.6584	45.9627	kalanchoe_fedtschenkoi	Kaladp0131s0012.1.v1.1	55.873	46.9841
A4U43_C04F14610	asparagus_officinalis	ONK72000	42.236	33.2298	saccharum_spontaneum	Sspon.06G0002850-2D-mRNA-1	50.1845	39.4834
A4U43_C04F14610	asparagus_officinalis	ONK72000	58.6957	49.6894	corymbia_citriodora	cds-KAF8011134.1	59.434	50.3145
A4U43_C04F14610	asparagus_officinalis	ONK72000	60.559	47.8261	citrus_clementina	ESR60300	61.3208	48.4277
A4U43_C04F14610	asparagus_officinalis	ONK72000	60.2484	48.4472	fraxinus_excelsior	FRAEX38873_v2_000167560.1.cds	66.4384	53.4247
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.6273	48.7578	echinochloa_crusgalli	scaffold161.111.cds	62.1359	50.8091
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.6273	48.7578	echinochloa_crusgalli	scaffold54.506.cds	62.1359	50.8091
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.6273	48.7578	echinochloa_crusgalli	scaffold38.146.cds	62.1359	50.8091
A4U43_C04F14610	asparagus_officinalis	ONK72000	37.2671	28.5714	ostreococcus_lucimarinus	ABO97466	49.1803	37.7049
A4U43_C04F14610	asparagus_officinalis	ONK72000	55.2795	47.205	triticum_dicoccoides	TRIDC7AG033760.1	62.4561	53.3333
A4U43_C04F14610	asparagus_officinalis	ONK72000	55.2795	47.5155	triticum_dicoccoides	TRIDC7BG025040.1	61.5917	52.9412
A4U43_C04F14610	asparagus_officinalis	ONK72000	49.0683	36.646	trifolium_pratense	Tp57577_TGAC_v2_mRNA15363	50	37.3418
A4U43_C04F14610	asparagus_officinalis	ONK72000	57.764	45.9627	brassica_rapa_ro18	A01p027900.1_BraROA.1	59.2357	47.1338
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.3168	50	eucalyptus_grandis	KCW53055	60.0629	50.6289
A4U43_C04F14610	asparagus_officinalis	ONK72000	58.3851	49.3789	actinidia_chinensis	PSS30329	61.039	51.6234
A4U43_C04F14610	asparagus_officinalis	ONK72000	56.2112	46.8944	actinidia_chinensis	PSR87477	61.3559	51.1864
A4U43_C04F14610	asparagus_officinalis	ONK72000	55.5901	44.0994	brassica_oleracea	Bo1g078580.1	60.678	48.1356
A4U43_C04F14610	asparagus_officinalis	ONK72000	58.3851	49.6894	vitis_vinifera	Vitvi14g01544_P001	61.4379	52.2876
A4U43_C04F14610	asparagus_officinalis	ONK72000	58.0745	46.8944	arabidopsis_lyrata	fgenesh2_kg.3__21__AT3G01920.1	61.3115	49.5082
A4U43_C04F14610	asparagus_officinalis	ONK72000	60.8696	51.2422	oryza_barthii	OBART08G21530.1	62.0253	52.2152
A4U43_C04F14610	asparagus_officinalis	ONK72000	56.8323	44.4099	camelina_sativa	Csa10g042730.1	62.2449	48.6395
A4U43_C04F14610	asparagus_officinalis	ONK72000	57.4534	44.7205	camelina_sativa	Csa19g001030.1	59.8706	46.6019
A4U43_C04F14610	asparagus_officinalis	ONK72000	47.5155	39.1304	daucus_carota	KZN08419	68.9189	56.7568
A4U43_C04F14610	asparagus_officinalis	ONK72000	40.9938	32.6087	eragrostis_curvula	TVU04941	48.7085	38.7454
A4U43_C04F14610	asparagus_officinalis	ONK72000	57.764	48.4472	coffea_canephora	CDP16696	59.2357	49.6815
A4U43_C04F14610	asparagus_officinalis	ONK72000	47.5155	34.7826	selaginella_moellendorffii	EFJ21302	51.5152	37.7104
A4U43_C04F14610	asparagus_officinalis	ONK72000	48.4472	35.4037	selaginella_moellendorffii	EFJ26848	51.4851	37.6238
A4U43_C04F14610	asparagus_officinalis	ONK72000	27.3292	17.0807	cyanidioschyzon_merolae	CMC144CT	31.0954	19.4346
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.0062	47.8261	zea_mays	Zm00001eb175140_P004	58.2822	47.2393
A4U43_C04F14610	asparagus_officinalis	ONK72000	56.5217	48.1366	amborella_trichopoda	ERN09935	70.2703	59.8456
A4U43_C04F14610	asparagus_officinalis	ONK72000	56.2112	45.9627	quercus_suber	cds-POE59963.1	64.8745	53.0466
A4U43_C04F14610	asparagus_officinalis	ONK72000	44.7205	38.5093	eragrostis_tef	Et_8B_060488.CDS	80	68.8889
A4U43_C04F14610	asparagus_officinalis	ONK72000	57.4534	48.4472	juglans_regia	cds.Jr01_06620_p1	58.5443	49.3671
A4U43_C04F14610	asparagus_officinalis	ONK72000	41.9255	33.8509	juglans_regia	cds.Jr01_06640_p1	51.1364	41.2879
A4U43_C04F14610	asparagus_officinalis	ONK72000	53.7267	42.8571	oryza_meridionalis	OMERI06G13600.1	57.8595	46.1538
A4U43_C04F14610	asparagus_officinalis	ONK72000	48.4472	37.8882	corylus_avellana	Cav05g25350.t1	50.6493	39.6104
A4U43_C04F14610	asparagus_officinalis	ONK72000	59.0062	49.3789	gossypium_raimondii	KJB33987	60.7029	50.7987
A4U43_C04F14610	asparagus_officinalis	ONK72000	58.0745	49.3789	hordeum_vulgare	HORVU.MOREX.r3.7HG0683980.1	62.963	53.5354
A4U43_C04F14610	asparagus_officinalis	ONK72000	56.5217	43.4783	vigna_radiata	Vradi0007s00540.1	59.2834	45.6026
A4U43_C04F14610	asparagus_officinalis	ONK72000	60.8696	51.2422	oryza_nivara	ONIVA08G24540.1	61.8297	52.0505

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

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RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression