RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	A4U43_C02F22580	Gene ID		Accession	-
Symbol		Alias	-	Full Name	uncharacterized protein
Status	Confidence	Length	23144 bases	Strand	Plus strand
Position	2 : 83988232 - 84011375	RNA binding domain	ProRS-C_1 , HGTP_anticodon , tRNA-synt_2b
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ONK78802	ProRS-C_1	PF09180	3.2e-27	1
ONK78802	HGTP_anticodon	PF03129	2.4e-21	2
ONK78802	tRNA-synt_2b	PF00587	1.6e-17	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID

Gene Model

Click here to download A4U43_C02F22580's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download A4U43_C02F22580's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C02F22580	asparagus_officinalis	ONK66527	51.8229	39.3229	asparagus_officinalis	ONK78802	21.6069	16.3952
A4U43_C02F22580	asparagus_officinalis	ONK78917	26.5372	13.754	asparagus_officinalis	ONK78802	17.8067	9.2291
A4U43_C02F22580	asparagus_officinalis	ONK74266	60.7798	40.8257	asparagus_officinalis	ONK78802	28.7731	19.3268
A4U43_C02F22580	asparagus_officinalis	ONK65088	50.6711	32.3825	asparagus_officinalis	ONK78802	32.7904	20.9555
A4U43_C02F22580	asparagus_officinalis	ONK68508	30	15.3731	asparagus_officinalis	ONK78802	21.8241	11.1835

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C02F22580	asparagus_officinalis	ONK78802	35.8306	27.4701	chondrus_crispus	CDF34238	57.6923	44.2308
A4U43_C02F22580	asparagus_officinalis	ONK78802	36.4821	27.6873	chlamydomonas_reinhardtii	PNW77268	61.5385	46.7033
A4U43_C02F22580	asparagus_officinalis	ONK78802	42.3453	35.2877	physcomitrium_patens	Pp3c2_3850V3.1	68.7831	57.3192
A4U43_C02F22580	asparagus_officinalis	ONK78802	40.1737	34.5277	marchantia_polymorpha	PTQ43449	80.0866	68.8312
A4U43_C02F22580	asparagus_officinalis	ONK78802	28.8817	25.4072	nymphaea_colorata	NC12G0094590.1:cds	72.2826	63.587
A4U43_C02F22580	asparagus_officinalis	ONK78802	28.5559	20.8469	arabidopsis_halleri	g02843.t1	57.5492	42.0131
A4U43_C02F22580	asparagus_officinalis	ONK78802	28.6645	20.8469	arabidopsis_halleri	g02845.t1	36.1644	26.3014
A4U43_C02F22580	asparagus_officinalis	ONK78802	36.3735	26.0586	caenorhabditis_elegans	T20H4.3a.1	57.6592	41.3081
A4U43_C02F22580	asparagus_officinalis	ONK78802	35.8306	27.3616	ostreococcus_lucimarinus	ABO96534	62.9771	48.0916
A4U43_C02F22580	asparagus_officinalis	ONK78802	40.0651	32.4647	selaginella_moellendorffii	EFJ15689	74.5455	60.404
A4U43_C02F22580	asparagus_officinalis	ONK78802	40.0651	32.3561	selaginella_moellendorffii	EFJ38227	74.5455	60.202
A4U43_C02F22580	asparagus_officinalis	ONK78802	36.6992	27.0358	cyanidioschyzon_merolae	CMS024CT	58.0756	42.7835
A4U43_C02F22580	asparagus_officinalis	ONK78802	45.3855	38.7622	amborella_trichopoda	ERN06564	79.1667	67.6136
A4U43_C02F22580	asparagus_officinalis	ONK78802	36.8078	26.8187	galdieria_sulphuraria	EME30269	48.017	34.9858
A4U43_C02F22580	asparagus_officinalis	ONK78802	38.5451	27.0358	saccharomyces_cerevisiae	YHR020W	51.5988	36.1919
A4U43_C02F22580	asparagus_officinalis	ONK78802	38.7622	29.8588	chara_braunii	GBG71437	63.6364	49.0196

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression