RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	A4U43_C01F5920	Gene ID		Accession	-
Symbol		Alias	-	Full Name	uncharacterized protein
Status	Confidence	Length	10225 bases	Strand	Minus strand
Position	1 : 10633447 - 10643671	RNA binding domain	EF1G
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ONK79395	EF1G	PF00647	3.2e-07	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID

Gene Model

Click here to download A4U43_C01F5920's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download A4U43_C01F5920's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C01F5920	asparagus_officinalis	ONK79396	54	48	asparagus_officinalis	ONK79395	45.3782	40.3361
A4U43_C01F5920	asparagus_officinalis	ONK73419	44.2177	43.5374	asparagus_officinalis	ONK79395	54.6218	53.7815
A4U43_C01F5920	asparagus_officinalis	ONK66919	41.2698	35.4497	asparagus_officinalis	ONK79395	65.5462	56.3025

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C01F5920	asparagus_officinalis	ONK79395	51.2605	36.1345	olea_europaea	OE9A078799C1	60.396	42.5743

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression