RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	A4U43_C01F30580	Gene ID		Accession	-
Symbol		Alias	-	Full Name	uncharacterized protein
Status	Confidence	Length	4288 bases	Strand	Minus strand
Position	1 : 119414913 - 119419200	RNA binding domain	Fibrillarin
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ONK81563	Fibrillarin	PF01269	1.4e-08	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID

Gene Model

Click here to download A4U43_C01F30580's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download A4U43_C01F30580's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C01F30580	asparagus_officinalis	ONK70289	29.3103	24.1379	asparagus_officinalis	ONK81563	62.963	51.8519

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C01F30580	asparagus_officinalis	ONK81563	28.1481	21.4815	helianthus_annuus	mRNA:HanXRQr2_Chr17g0814981	61.2903	46.7742
A4U43_C01F30580	asparagus_officinalis	ONK81563	26.6667	20.7407	helianthus_annuus	mRNA:HanXRQr2_Chr06g0255721	69.2308	53.8462
A4U43_C01F30580	asparagus_officinalis	ONK81563	30.3704	21.4815	helianthus_annuus	mRNA:HanXRQr2_Chr03g0134191	60.2941	42.6471
A4U43_C01F30580	asparagus_officinalis	ONK81563	30.3704	20.7407	helianthus_annuus	mRNA:HanXRQr2_Chr03g0134881	60.2941	41.1765
A4U43_C01F30580	asparagus_officinalis	ONK81563	29.6296	21.4815	helianthus_annuus	mRNA:HanXRQr2_Chr15g0705461	58.8235	42.6471
A4U43_C01F30580	asparagus_officinalis	ONK81563	34.0741	24.4444	prunus_avium	Pav_sc0001580.1_g050.1.mk:mrna	42.9907	30.8411
A4U43_C01F30580	asparagus_officinalis	ONK81563	29.6296	28.1481	musa_acuminata	Ma07_p01210.1	20.8333	19.7917
A4U43_C01F30580	asparagus_officinalis	ONK81563	34.0741	28.8889	panicum_hallii	PUZ48972	69.697	59.0909
A4U43_C01F30580	asparagus_officinalis	ONK81563	37.7778	25.9259	corylus_avellana	Cav07g11400.t1	60.7143	41.6667

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression