RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	A4U43_C01F200	Gene ID		Accession	-
Symbol		Alias	-	Full Name	uncharacterized protein
Status	Confidence	Length	7525 bases	Strand	Minus strand
Position	1 : 140181 - 147705	RNA binding domain	zf-C2H2_jaz , zf-met
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ONK78849	zf-C2H2_jaz	PF12171	8.6e-12	1
ONK78849	zf-met	PF12874	9.4e-26	2
ONK78849	zf-met	PF12874	9.4e-26	3
ONK78849	zf-met	PF12874	9.4e-26	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID

Gene Model

Click here to download A4U43_C01F200's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download A4U43_C01F200's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C01F200

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C01F200	asparagus_officinalis	ONK78849	32.1656	17.5159	papaver_somniferum	RZC44176	44.8889	24.4444
A4U43_C01F200	asparagus_officinalis	ONK78849	44.9045	28.6624	beta_vulgaris	KMT16941	24.7803	15.8172
A4U43_C01F200	asparagus_officinalis	ONK78849	28.0255	16.879	amborella_trichopoda	ERN07060	34.9206	21.0317

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression