RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	A4U43_C01F14060	Gene ID		Accession	-
Symbol		Alias	-	Full Name	uncharacterized protein
Status	Confidence	Length	11381 bases	Strand	Plus strand
Position	1 : 37700903 - 37712283	RNA binding domain	RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ONK80117	RRM_1	PF00076	1.4e-15	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID

Gene Model

Click here to download A4U43_C01F14060's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download A4U43_C01F14060's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C01F14060

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
A4U43_C01F14060	asparagus_officinalis	ONK80117	39.4737	28.0702	papaver_somniferum	RZC61860	31.4685	22.3776
A4U43_C01F14060	asparagus_officinalis	ONK80117	52.6316	26.3158	ananas_comosus	Aco000949.1.mrna1	17.7515	8.87574
A4U43_C01F14060	asparagus_officinalis	ONK80117	42.1053	30.7018	olea_europaea	OE9A084188C1	81.3559	59.322
A4U43_C01F14060	asparagus_officinalis	ONK80117	40.3509	28.9474	digitaria_exilis	Dexi1A01G0029770.1:cds	77.9661	55.9322
A4U43_C01F14060	asparagus_officinalis	ONK80117	42.9825	29.8246	digitaria_exilis	Dexi4A01G0006550.1:cds	62.8205	43.5897

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression