Ensembl ID ENSG00000168066 Gene ID 7536 Accession 12950
Gene Symbol SF1 Alias BBP;MBBP;ZFM1;ZNF162;D11S636;ZCCHC25 Full Name splicing factor 1
Position 11 : 64764606 - 64778786 Length 14181 bases Strand Minus strand
Status Confidence Main interacting RNAsmRNARBP type Canonical_RBPs
Summary This gene encodes a nuclear pre-mRNA splicing factor. The encoded protein specifically recognizes the intron branch point sequence at the 3' splice site, together with the large subunit of U2 auxiliary factor (U2AF), and is required for the early stages of spliceosome assembly. It also plays a role in nuclear pre-mRNA retention and transcriptional repression. The encoded protein contains an N-terminal U2AF ligand motif, a central hnRNP K homology motif and quaking 2 region which bind a key branch-site adenosine within the branch point sequence, a zinc knuckles domain, and a C-terminal proline-rich domain. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2016]

ENSG00000168066 Expression In 33 Tumors

Ensembl ID Gene symbol Log2 Foldchange Pvaue Cancer
ENSG00000168066 SF1 -0.4 5.59e-22 KIRP
Ensembl ID Gene symbol Cancer types Pubmed ID
ENSG00000168066 SF1 colorectal cancer 17383426
ENSG00000168066 SF1 testicular germ cell tumors 20736371
ENSG00000168066 SF1 breast cancer 23284704
ENSG00000168066 SF1 breast cancer 23843040
ENSG00000168066 SF1 cancers 25216752
ENSG00000168066 SF1 tumor 28108736
ENSG00000168066 SF1 GBM 29415469
ENSG00000168066 SF1 tumours 29926253
ENSG00000168066 SF1 colon cancer 30155352
ENSG00000168066 SF1 cancers 30320932
ENSG00000168066 SF1 tumors 30481162
ENSG00000168066 SF1 GBM 30736462
ENSG00000168066 SF1 tumor 9212169
Ensembl ID Gene symbol Disease/phenotype Mutation type Mutated / Total samples Literature
Ensembl ID Gene symbol Cancer P-value Which worse show
ENSG00000168066 SF1 MESO 0.0073 low
ENSG00000168066 SF1 UVM 0.0093 low
ENSG00000168066 SF1 PAAD 0.0024 low
ENSG00000168066 SF1 UCEC 0.039 high
ENSG00000168066 SF1 THCA 0.01 high
ENSG00000168066 SF1 ACC 0.00016 high
ENSG00000168066 SF1 LUSC 0.032 high
ENSG00000168066 SF1 READ 0.0092 low
ENSG00000168066 SF1 THYM 0.00015 low
ENSG00000168066 SF1 UCS 0.021 low
ENSG00000168066 SF1 KIRC 0.0016 low
ENSG00000168066 SF1 LAML 0.018 high
ENSG00000168066 SF1 GBM 0.041 low
ENSG00000168066 SF1 SKCM 5e-04 high
ENSG00000168066 SF1 LIHC 1e-04 high
Ensembl ID Gene symbol Cancer CNV type -log10(q-value) G-score average amplitude frequency
ENSG00000168066 SF1 HNSC Amp 3.933104 0.185354 0.426732 0.279693
ENSG00000168066 SF1 BRCA Del 3.318951 0.083404 0.437146 0.225926