Ensembl ID ENSG00000138375 Gene ID 50485 Accession 11102
Gene Symbol SMARCAL1 Alias HARP;HHARP Full Name SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1
Position 2 : 216412414 - 216483053 Length 70640 bases Strand Plus strand
Status Confidence Main interacting RNAsN.A.RBP type Canonical_RBPs
Summary The protein encoded by this gene is a member of the SWI/SNF family of proteins. Members of this family have helicase and ATPase activities and are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein shows sequence similarity to the E. coli RNA polymerase-binding protein HepA. Mutations in this gene are a cause of Schimke immunoosseous dysplasia (SIOD), an autosomal recessive disorder with the diagnostic features of spondyloepiphyseal dysplasia, renal dysfunction, and T-cell immunodeficiency. [provided by RefSeq, Jul 2008]

ENSG00000138375 Expression In 33 Tumors

Ensembl ID Gene symbol Log2 Foldchange Pvaue Cancer
ENSG00000138375 0.32 6.16e-14 KIRC
ENSG00000138375 0.47 1.29e-13 LIHC
ENSG00000138375 0.84 8.63e-11 CHOL
Ensembl ID Gene symbol Cancer types Pubmed ID
ENSG00000138375 cancer 22995303
ENSG00000138375 tumor 26578802
ENSG00000138375 cancer 27407112
ENSG00000138375 cancer 27797382
ENSG00000138375 cancer 28117753
ENSG00000138375 cancer 28289221
ENSG00000138375 cancer 28954549
ENSG00000138375 cancer 29802247
ENSG00000138375 Cancer 30936075
ENSG00000138375 tumor 31447390
Ensembl ID Gene symbol Disease/phenotype Mutation type Mutated / Total samples Literature
Ensembl ID Gene symbol Cancer P-value Which worse show
ENSG00000138375 MESO 0.011 high
ENSG00000138375 UVM 0.0037 high
ENSG00000138375 UCEC 0.00052 high
ENSG00000138375 ACC 0.0032 high
ENSG00000138375 HNSC 0.025 low
ENSG00000138375 READ 0.037 low
ENSG00000138375 PCPG 0.031 high
ENSG00000138375 THYM 0.0031 low
ENSG00000138375 KIRC 0.006 low
ENSG00000138375 PRAD 0.027 high
ENSG00000138375 LAML 0.006 low
ENSG00000138375 GBM 0.031 high
ENSG00000138375 LIHC 0.00034 high
Ensembl ID Gene symbol Cancer CNV type -log10(q-value) G-score average amplitude frequency
ENSG00000138375 LUSC Del 16.155423 0.187789 0.402588 0.291417
ENSG00000138375 CESC Del 31.282883 0.329199 0.536958 0.386441
ENSG00000138375 KIRP Amp 1.259300 0.069152 0.554374 0.163194
ENSG00000138375 KIRP Del 1.215981 0.032329 0.602410 0.034722
ENSG00000138375 SARC Del 4.997089 0.216530 0.485588 0.361868
ENSG00000138375 ESCA Del 1.280086 0.113561 0.349897 0.239130
ENSG00000138375 HNSC Del 20.492888 0.174220 0.386994 0.279693
ENSG00000138375 BLCA Del 21.308405 0.257660 0.432227 0.460784
ENSG00000138375 KIRC Del 9.190428 0.063770 0.534563 0.083333