Ensembl ID ENSG00000131051 Gene ID 9584 Accession 15923
Gene Symbol RBM39 Alias HCC1;CAPER;RNPC2;FSAP59;CAPERalpha Full Name RNA binding motif protein 39
Position 20 : 35701347 - 35742312 Length 40966 bases Strand Minus strand
Status Confidence Main interacting RNAsmRNARBP type Canonical_RBPs
Summary This gene encodes a member of the U2AF65 family of proteins. The encoded protein is found in the nucleus, where it co-localizes with core spliceosomal proteins. It has been shown to play a role in both steroid hormone receptor-mediated transcription and alternative splicing, and it is also a transcriptional coregulator of the viral oncoprotein v-Rel. Multiple transcript variants have been observed for this gene. A related pseudogene has been identified on chromosome X. [provided by RefSeq, Aug 2011]

ENSG00000131051 Expression In 33 Tumors

Ensembl ID Gene symbol Log2 Foldchange Pvaue Cancer
ENSG00000131051 RBM39 0.81 3.56e-18 COAD
ENSG00000131051 RBM39 0.31 4.08e-11 PRAD
Ensembl ID Gene symbol Cancer types Pubmed ID
ENSG00000131051 RBM39 prostate cancer 21176179
ENSG00000131051 RBM39 tumor 22009261
ENSG00000131051 RBM39 tumor 22538444
ENSG00000131051 RBM39 colorectal cancer 22711543
ENSG00000131051 RBM39 lung cancer 24643682
ENSG00000131051 RBM39 Cancer 24795046
ENSG00000131051 RBM39 tumor 24876127
ENSG00000131051 RBM39 cancer 26934653
ENSG00000131051 RBM39 cancers 27050129
ENSG00000131051 RBM39 cancer 28437394
ENSG00000131051 RBM39 AML 30799057
ENSG00000131051 RBM39 Cancer 30889374
Ensembl ID Gene symbol Disease/phenotype Mutation type Mutated / Total samples Literature
Ensembl ID Gene symbol Cancer P-value Which worse show
ENSG00000131051 RBM39 SARC 0.0037 high
ENSG00000131051 RBM39 STAD 0.041 low
ENSG00000131051 RBM39 UVM 0.037 high
ENSG00000131051 RBM39 PAAD 0.017 low
ENSG00000131051 RBM39 UCEC 0.011 high
ENSG00000131051 RBM39 ACC 0.047 high
ENSG00000131051 RBM39 LGG 0.0011 high
ENSG00000131051 RBM39 LUAD 0.013 low
ENSG00000131051 RBM39 PCPG 0.00087 high
ENSG00000131051 RBM39 THYM 0.0057 low
ENSG00000131051 RBM39 BRCA 0.019 high
ENSG00000131051 RBM39 COAD 0.033 low
ENSG00000131051 RBM39 ESCA 0.004 high
ENSG00000131051 RBM39 DLBC 0.05 low
ENSG00000131051 RBM39 PRAD 0.029 high
ENSG00000131051 RBM39 BLCA 0.004 low
ENSG00000131051 RBM39 SKCM 0.00073 low
ENSG00000131051 RBM39 LIHC 0.0072 high
Ensembl ID Gene symbol Cancer CNV type -log10(q-value) G-score average amplitude frequency
ENSG00000131051 RBM39 LUAD Amp 1.000805 0.125382 0.406393 0.445736
ENSG00000131051 RBM39 CESC Amp 1.134318 0.145948 0.662566 0.433898
ENSG00000131051 RBM39 READ Amp 19.997437 0.688542 1.316029 0.890909
ENSG00000131051 RBM39 COAD Amp 34.007904 0.448076 1.154142 0.720621
ENSG00000131051 RBM39 UCS Amp 0.985132 0.543096 0.779087 0.785714
ENSG00000131051 RBM39 BRCA Amp 1.909666 0.168567 0.579673 0.437037