Ensembl ID ENSG00000124788 Gene ID 6310 Accession 10548
Gene Symbol ATXN1 Alias ATX1;SCA1;D6S504E Full Name ataxin 1
Position 6 : 16299112 - 16761460 Length 462349 bases Strand Minus strand
Status Confidence Main interacting RNAsmRNARBP type Canonical_RBPs
Summary The autosomal dominant cerebellar ataxias (ADCA) are a heterogeneous group of neurodegenerative disorders characterized by progressive degeneration of the cerebellum, brain stem and spinal cord. Clinically, ADCA has been divided into three groups: ADCA types I-III. ADCAI is genetically heterogeneous, with five genetic loci, designated spinocerebellar ataxia (SCA) 1, 2, 3, 4 and 6, being assigned to five different chromosomes. ADCAII, which always presents with retinal degeneration (SCA7), and ADCAIII often referred to as the `pure' cerebellar syndrome (SCA5), are most likely homogeneous disorders. Several SCA genes have been cloned and shown to contain CAG repeats in their coding regions. ADCA is caused by the expansion of the CAG repeats, producing an elongated polyglutamine tract in the corresponding protein. The expanded repeats are variable in size and unstable, usually increasing in size when transmitted to successive generations. The function of the ataxins is not known. This locus has been mapped to chromosome 6, and it has been determined that the diseased allele contains 40-83 CAG repeats, compared to 6-39 in the normal allele, and is associated with spinocerebellar ataxia type 1 (SCA1). Alternative splicing results in multiple transcript variants, with one variant encoding multiple distinct proteins, ATXN1 and Alt-ATXN1, due to the use of overlapping alternate reading frames. [provided by RefSeq, Nov 2017]

ENSG00000124788 Expression In 33 Tumors

Ensembl ID Gene symbol Log2 Foldchange Pvaue Cancer
ENSG00000124788 ATXN1 0.45 4.00e-13 KIRC
ENSG00000124788 ATXN1 -1.0 3.30e-16 UCEC
Ensembl ID Gene symbol Cancer types Pubmed ID
ENSG00000124788 ATXN1 cancer 21425306
ENSG00000124788 ATXN1 breast cancer 25686829
ENSG00000124788 ATXN1 cancer 25877892
ENSG00000124788 ATXN1 cancer 27401861
ENSG00000124788 ATXN1 cancer 28212558
ENSG00000124788 ATXN1 cervical cancer 29212253
ENSG00000124788 ATXN1 tumors 30344795
ENSG00000124788 ATXN1 AML 31242922
Ensembl ID Gene symbol Disease/phenotype Mutation type Mutated / Total samples Literature
Ensembl ID Gene symbol Cancer P-value Which worse show
ENSG00000124788 ATXN1 MESO 0.02 high
ENSG00000124788 ATXN1 SARC 0.029 high
ENSG00000124788 ATXN1 STAD 0.0033 high
ENSG00000124788 ATXN1 UVM 0.023 high
ENSG00000124788 ATXN1 PAAD 0.015 high
ENSG00000124788 ATXN1 UCEC 0.0066 low
ENSG00000124788 ATXN1 THCA 0.0096 high
ENSG00000124788 ATXN1 ACC 0.018 high
ENSG00000124788 ATXN1 LGG 0.021 high
ENSG00000124788 ATXN1 HNSC 0.011 low
ENSG00000124788 ATXN1 LUAD 0.0056 low
ENSG00000124788 ATXN1 ESCA 0.0061 low
ENSG00000124788 ATXN1 OV 0.013 low
ENSG00000124788 ATXN1 PRAD 0.019 low
ENSG00000124788 ATXN1 BLCA 0.0025 high
ENSG00000124788 ATXN1 LAML 0.0019 low
ENSG00000124788 ATXN1 GBM 0.031 high
ENSG00000124788 ATXN1 SKCM 0.00012 low
Ensembl ID Gene symbol Cancer CNV type -log10(q-value) G-score average amplitude frequency
ENSG00000124788 ATXN1 LUSC Del 0.620145 0.063965 0.349539 0.261477
ENSG00000124788 ATXN1 PAAD Del 1.839413 0.068254 0.346745 0.385870
ENSG00000124788 ATXN1 ESCA Del 2.486015 0.145334 0.424198 0.309783
ENSG00000124788 ATXN1 SKCM Amp 4.528347 0.230702 0.743406 0.569482
ENSG00000124788 ATXN1 LIHC Amp 3.979117 0.187754 0.782889 0.413514
ENSG00000124788 ATXN1 BLCA Amp 12.112501 0.428367 0.666517 0.355392
ENSG00000124788 ATXN1 BRCA Amp 2.165642 0.172858 0.581246 0.265741
ENSG00000124788 ATXN1 STAD Del 1.472907 0.071686 0.390517 0.165533
ENSG00000124788 ATXN1 UVM Amp 5.139661 0.410520 1.223366 0.562500
ENSG00000124788 ATXN1 OV Amp 10.210420 0.550636 0.786449 0.511226