Ensembl ID ENSG00000060688 Gene ID 9410 Accession 30857
Gene Symbol SNRNP40 Alias 40K;SPF38;WDR57;PRP8BP;HPRP8BP;PRPF8BP Full Name small nuclear ribonucleoprotein U5 subunit 40
Position 1 : 31259568 - 31296788 Length 37221 bases Strand Minus strand
Status Confidence Main interacting RNAssnRNARBP type Non-canonical_RBPs
Summary This gene encodes a component of the U5 small nuclear ribonucleoprotein (snRNP) particle. The U5 snRNP is part of the spliceosome, a multiprotein complex that catalyzes the removal of introns from pre-messenger RNAs. [provided by RefSeq, Jul 2008]

ENSG00000060688 Expression In 33 Tumors

Ensembl ID Gene symbol Log2 Foldchange Pvaue Cancer
ENSG00000060688 SNRNP40 -0.3 6.86e-16 KIRC
ENSG00000060688 SNRNP40 0.37 2.92e-19 BRCA
ENSG00000060688 SNRNP40 -0.8 4.16e-29 KICH
ENSG00000060688 SNRNP40 0.71 6.72e-22 LUSC
Ensembl ID Gene symbol Cancer types Pubmed ID
ENSG00000060688 SNRNP40 breast cancer 27138336
Ensembl ID Gene symbol Disease/phenotype Mutation type Mutated / Total samples Literature
Ensembl ID Gene symbol Cancer P-value Which worse show
ENSG00000060688 SNRNP40 MESO 0.00096 high
ENSG00000060688 SNRNP40 SARC 0.00019 high
ENSG00000060688 SNRNP40 STAD 0.016 low
ENSG00000060688 SNRNP40 CHOL 0.041 low
ENSG00000060688 SNRNP40 THCA 0.047 low
ENSG00000060688 SNRNP40 ACC 0.00075 high
ENSG00000060688 SNRNP40 LUSC 0.027 low
ENSG00000060688 SNRNP40 HNSC 0.01 low
ENSG00000060688 SNRNP40 READ 0.012 low
ENSG00000060688 SNRNP40 KIRP 0.016 high
ENSG00000060688 SNRNP40 KICH 0.011 high
ENSG00000060688 SNRNP40 LUAD 0.031 low
ENSG00000060688 SNRNP40 THYM 0.023 low
ENSG00000060688 SNRNP40 BRCA 0.0017 low
ENSG00000060688 SNRNP40 ESCA 0.018 low
ENSG00000060688 SNRNP40 DLBC 0.023 low
ENSG00000060688 SNRNP40 KIRC 0.0036 low
ENSG00000060688 SNRNP40 PRAD 0.05 high
ENSG00000060688 SNRNP40 LAML 0.0041 high
ENSG00000060688 SNRNP40 GBM 0.0014 low
ENSG00000060688 SNRNP40 CESC 0.016 low
Ensembl ID Gene symbol Cancer CNV type -log10(q-value) G-score average amplitude frequency
ENSG00000060688 SNRNP40 CHOL Del 12.490687 0.781914 0.669359 0.638889
ENSG00000060688 SNRNP40 LUSC Del 1.613099 0.078444 0.376377 0.417166
ENSG00000060688 SNRNP40 KIRP Del 4.291084 0.059771 0.584727 0.166667
ENSG00000060688 SNRNP40 READ Del 6.814944 0.182410 0.446474 0.424242
ENSG00000060688 SNRNP40 COAD Del 8.490764 0.103944 0.426124 0.321508
ENSG00000060688 SNRNP40 PAAD Del 0.763851 0.046483 0.353332 0.288043
ENSG00000060688 SNRNP40 HNSC Del 0.768631 0.054962 0.352766 0.162835
ENSG00000060688 SNRNP40 LIHC Del 14.434726 0.198096 0.532706 0.370270
ENSG00000060688 SNRNP40 PCPG Del 1.819360 0.081533 0.673079 0.623457
ENSG00000060688 SNRNP40 BRCA Del 10.076744 0.115082 0.395742 0.360185
ENSG00000060688 SNRNP40 STAD Del 2.489381 0.084206 0.349311 0.233560
ENSG00000060688 SNRNP40 UCEC Del 3.428993 0.076328 0.468222 0.096475
ENSG00000060688 SNRNP40 KIRC Del 3.572401 0.040394 0.415900 0.170455
ENSG00000060688 SNRNP40 UVM Del 1.063142 0.073079 0.762192 0.300000
ENSG00000060688 SNRNP40 OV Del 7.321983 0.273187 0.540515 0.298791