RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSDCDG00000017076	Gene ID	114789162	Accession	-
Symbol		Alias	-	Full Name	far upstream element binding protein 1
Status	Confidence	Length	9186 bases	Strand	Plus strand
Position	4 : 2480919 - 2490104	RNA binding domain	KH_2 , DUF1897 , KH_1
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
ENSDCDP00000022096	KH_2	PF07650	4e-21	1
ENSDCDP00000022096	KH_2	PF07650	4e-21	2
ENSDCDP00000022096	DUF1897	PF09005	2.3e-05	3
ENSDCDP00000022096	KH_1	PF00013	6.4e-67	4
ENSDCDP00000022096	KH_1	PF00013	6.4e-67	5
ENSDCDP00000022096	KH_1	PF00013	6.4e-67	6
ENSDCDP00000022096	KH_1	PF00013	6.4e-67	7
ENSDCDP00000022112	KH_2	PF07650	5.8e-21	1
ENSDCDP00000022112	KH_2	PF07650	5.8e-21	2
ENSDCDP00000022112	DUF1897	PF09005	3.3e-12	3
ENSDCDP00000022112	DUF1897	PF09005	3.3e-12	4
ENSDCDP00000022112	KH_1	PF00013	1.1e-66	5
ENSDCDP00000022112	KH_1	PF00013	1.1e-66	6
ENSDCDP00000022112	KH_1	PF00013	1.1e-66	7
ENSDCDP00000022112	KH_1	PF00013	1.1e-66	8
ENSDCDP00000022125	KH_2	PF07650	5.5e-21	1
ENSDCDP00000022125	KH_2	PF07650	5.5e-21	2
ENSDCDP00000022125	DUF1897	PF09005	1.5e-13	3
ENSDCDP00000022125	DUF1897	PF09005	1.5e-13	4
ENSDCDP00000022125	KH_1	PF00013	1.2e-66	5
ENSDCDP00000022125	KH_1	PF00013	1.2e-66	6
ENSDCDP00000022125	KH_1	PF00013	1.2e-66	7
ENSDCDP00000022125	KH_1	PF00013	1.2e-66	8
ENSDCDP00000022127	KH_2	PF07650	3.8e-21	1
ENSDCDP00000022127	KH_2	PF07650	3.8e-21	2
ENSDCDP00000022127	DUF1897	PF09005	1.9e-06	3
ENSDCDP00000022127	KH_1	PF00013	6.9e-67	4
ENSDCDP00000022127	KH_1	PF00013	6.9e-67	5
ENSDCDP00000022127	KH_1	PF00013	6.9e-67	6
ENSDCDP00000022127	KH_1	PF00013	6.9e-67	7
ENSDCDP00000022152	KH_2	PF07650	7.3e-22	1
ENSDCDP00000022152	KH_2	PF07650	7.3e-22	2
ENSDCDP00000022152	DUF1897	PF09005	7e-13	3
ENSDCDP00000022152	DUF1897	PF09005	7e-13	4
ENSDCDP00000022152	KH_1	PF00013	1.7e-67	5
ENSDCDP00000022152	KH_1	PF00013	1.7e-67	6
ENSDCDP00000022152	KH_1	PF00013	1.7e-67	7
ENSDCDP00000022152	KH_1	PF00013	1.7e-67	8

Showing 1 to 38 of 38 entries

Pubmed ID	Full Name	Cell	Author	Time	Doi
No data available in table

Pubmed ID	Title	Author	Time	Journal
No data available in table

Transcripts

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Search:

Name	Transcript ID	bp	Protein	Translation ID
-	ENSDCDT00000030213	2566	621aa	ENSDCDP00000022096
-	ENSDCDT00000030233	3046	664aa	ENSDCDP00000022112
-	ENSDCDT00000030246	2947	631aa	ENSDCDP00000022125
-	ENSDCDT00000030248	2881	609aa	ENSDCDP00000022127
-	ENSDCDT00000030273	1422	473aa	ENSDCDP00000022152

Showing 1 to 5 of 5 entries

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Gene Model

Click here to download ENSDCDG00000017076's gene model file

ensgID	Trait	pValue	Pubmed ID
No data available in table

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID
No data available in table

Protein-Protein Interaction (PPI)

Click here to download ENSDCDG00000017076's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000055806	81.6529	78.5124	denticeps_clupeoides	ENSDCDP00000022112	74.3976	71.5361
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000002011	70.2866	60.181	denticeps_clupeoides	ENSDCDP00000022112	70.1807	60.0904
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000007039	57.2139	45.2736	denticeps_clupeoides	ENSDCDP00000022112	34.6386	27.4096
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000018920	38.013	22.4622	denticeps_clupeoides	ENSDCDP00000022112	26.506	15.6627
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000008911	37.3576	23.0068	denticeps_clupeoides	ENSDCDP00000022112	24.6988	15.2108
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000032180	41.6667	25.2315	denticeps_clupeoides	ENSDCDP00000022112	27.1084	16.4157
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000055767	35.0109	19.6937	denticeps_clupeoides	ENSDCDP00000022112	24.0964	13.5542
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000003524	32.5658	18.4211	denticeps_clupeoides	ENSDCDP00000022112	29.8193	16.8675
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000035563	32.0786	18.9853	denticeps_clupeoides	ENSDCDP00000022112	29.5181	17.4699
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000035577	31.2397	19.0083	denticeps_clupeoides	ENSDCDP00000022112	28.4639	17.3193

Showing 1 to 10 of 15 entries

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Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000022112	17.1687	10.6928	caenorhabditis_elegans	Y119D3B.17.2	26.3889	16.4352
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000022112	19.8795	11.1446	caenorhabditis_elegans	Y59A8B.10d.1	31.6547	17.7458
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000022112	40.0602	26.506	caenorhabditis_elegans	C36E6.1b.1	41.4977	27.4571
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000022112	39.3072	24.3976	caenorhabditis_elegans	M01A10.1.1	44.5392	27.6451
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000022112	22.4398	12.3494	caenorhabditis_elegans	M88.5c.1	17.4473	9.60187
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000022112	24.8494	14.9096	drosophila_melanogaster	FBpp0293521	28.7958	17.2775
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000022112	24.6988	13.7048	drosophila_melanogaster	FBpp0306419	21.0256	11.6667
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000022112	21.8373	12.6506	drosophila_melanogaster	FBpp0293680	22.7273	13.1661
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000022112	17.9217	10.8434	ciona_intestinalis	ENSCINP00000001984	33.3333	20.1681
ENSDCDG00000017076	denticeps_clupeoides	ENSDCDP00000022112	16.1145	8.43373	ciona_intestinalis	ENSCINP00000025950	37.6761	19.7183

Showing 1 to 10 of 59 entries

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Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression